Pseudomonas aeruginosa 6077

Strain Overview
Organism Name Pseudomonas aeruginosa 6077
Species Pseudomonas aeruginosa
Strain 6077
Description/Title Generic sample from Pseudomonas aeruginosa 6077
Annotated Genes 6518
Partial Genes 58
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cornea/ocular infection
Geographic Location
Location Name USA
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 235
mutL
13		 trpE
4		 nuoD
1		 guaA
3		 aroE
11		 acsA
38		 ppsA
2
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000481745.1
Assembly Status latest
Scaffolds 13
Contigs 45
Contig N50 380116
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360670
NCBI Taxonomy ID 1402498
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6515
CDS 6428
tRNA 68
rRNA 19
pseudo 3

Subcellular Localization

Localization Count
Cytoplasmic 2851
Cytoplasmic Membrane 1420
Periplasmic 179
Outer Membrane 181
Extracellular 80
Unknown 1566
Unknown (This protein may have multiple localization sites) 151
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

13 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF