| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa 18A |
| Species | Pseudomonas aeruginosa |
| Strain | 18A |
| Description/Title | Non-tumor DNA sample from Blood of a human female participant in the dbGaP study "Women's Health Initiative" |
| Annotated Genes | 5742 |
| Partial Genes | 301 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Host Species Disease | cystic fibrosis |
| Geographic Location | |
|---|---|
| Isolation Source | sputum |
| Sample Provider | |
|---|---|
| Name | |
| Institution | European Bioinformatics Institute |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | 788 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 179 |
| Contig N50 | 63156 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMEA2272507 |
| NCBI Taxonomy ID | 9606 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5559 |
| CDS | 5484 |
| pseudo | 183 |
| tRNA | 59 |
| rRNA | 15 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2513 |
| Cytoplasmic Membrane | 1266 |
| Periplasmic | 164 |
| Outer Membrane | 155 |
| Extracellular | 68 |
| Unknown | 1198 |
| Unknown (This protein may have multiple localization sites) | 126 |
| Flagellar | 17 |
| Fimbrial | 4 |
| T3SS | 3 |
| Outer Membrane Vesicle | 12 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |