| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa ATCC 15442 |
| Species | Pseudomonas aeruginosa |
| Strain | ATCC 15442 |
| Description/Title | General Sample for Pseudomonas aeruginosa ATCC 15442 |
| Annotated Genes | 6395 |
| Partial Genes | 194 |
| Host Information |
|---|
| Geographic Location |
|---|
| Sample Provider | |
|---|---|
| Name | Chao Li |
| lichao126688@126.com | |
| Institution | State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | 252 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 200 |
| Contigs | 200 |
| Contig N50 | 128849 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02404646 |
| NCBI Taxonomy ID | 1424337 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6264 |
| CDS | 6187 |
| pseudo | 131 |
| tRNA | 62 |
| rRNA | 14 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2640 |
| Cytoplasmic Membrane | 1305 |
| Periplasmic | 161 |
| Outer Membrane | 144 |
| Extracellular | 72 |
| Unknown | 1366 |
| Unknown (This protein may have multiple localization sites) | 144 |
| Flagellar | 17 |
| Fimbrial | 8 |
| T3SS | 4 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |