Strain Overview | |
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Organism Name | Pseudomonas aeruginosa LESB65 |
Species | Pseudomonas aeruginosa |
Strain | LESB65 |
Description/Title | Sample from Pseudomonas aeruginosa LESB65 |
Annotated Genes | 6048 |
Partial Genes | 7 |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Host Species Disease | cystic fibrosis |
Geographic Location | |
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Location Name | United Kingdom |
Isolation Source | chronic infection CF isolate |
Sample Provider | |
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Name | |
Institution | University Laval, Institut de Biologie Integrative et des Systemes (Ibis) |
Date Collected | 2003 |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | paeruginosa | 146 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 3 |
Contig N50 | 3751411 |
Assembly Level | Chromosome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03081518 |
NCBI Taxonomy ID | 1408273 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Pseudomonas aeruginosa LESB65 sequence. |
Feature | Count |
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gene | 5999 |
CDS | 5922 |
tRNA | 64 |
pseudo | 49 |
rRNA | 12 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2683 |
Cytoplasmic Membrane | 1340 |
Periplasmic | 172 |
Outer Membrane | 163 |
Extracellular | 72 |
Unknown | 1364 |
Unknown (This protein may have multiple localization sites) | 149 |
Flagellar | 17 |
Fimbrial | 4 |
Host Associated | 2 |
T3SS | 4 |
Outer Membrane Vesicle | 11 |
Name | Length | GC | |
---|---|---|---|
Pseudomonas aeruginosa LESB65 sequence. | 6527005 bp | 66.4% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |