Strain Overview | |
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Organism Name | Pseudomonas aeruginosa ATCC 14886 |
Species | Pseudomonas aeruginosa |
Strain | ATCC 14886 |
Description/Title | Sample from Pseudomonas aeruginosa ATCC 14886 |
Annotated Genes | 5840 |
Partial Genes | 252 |
Host Information |
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Geographic Location | |
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Isolation Source | soil |
Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | paeruginosa | 260 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | 211 |
Contigs | 211 |
Contig N50 | 70107 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02471996 |
NCBI Taxonomy ID | 1163392 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 5833 |
CDS | 5708 |
tRNA | 51 |
pseudo | 7 |
rRNA | 3 |
Localization | Count |
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Cytoplasmic | 2615 |
Cytoplasmic Membrane | 1304 |
Periplasmic | 168 |
Outer Membrane | 162 |
Extracellular | 78 |
Unknown | 1239 |
Unknown (This protein may have multiple localization sites) | 142 |
Flagellar | 17 |
Fimbrial | 8 |
T3SS | 4 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |