Strain Overview | |
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Organism Name | Pseudomonas aeruginosa ATCC 700888 |
Species | Pseudomonas aeruginosa |
Strain | ATCC 700888 |
Description/Title | Sample from Pseudomonas aeruginosa ATCC 700888 |
Annotated Genes | 6514 |
Partial Genes | 738 |
Host Information |
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Geographic Location | |
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Isolation Source | biofilm from an industrial water system |
Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | paeruginosa | - |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | 600 |
Contigs | 600 |
Contig N50 | 30042 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02471986 |
NCBI Taxonomy ID | 1163394 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6511 |
CDS | 6367 |
tRNA | 53 |
rRNA | 3 |
pseudo | 3 |
Localization | Count |
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Cytoplasmic | 2797 |
Cytoplasmic Membrane | 1327 |
Periplasmic | 178 |
Outer Membrane | 178 |
Extracellular | 88 |
Unknown | 1658 |
Unknown (This protein may have multiple localization sites) | 141 |
Flagellar | 18 |
Fimbrial | 8 |
T3SS | 4 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |