Log of Annotation Updates

48 annotation updates returned
Ordered by Date , descending

Download options

Date Locus Tag Strain Description Submitter
Sep 9, 2008 PA0457.1 Pseudomonas aeruginosa PAO1 New CDS gene annotation added. Product name: hypothetical membrane protein. Product name confidence: Class 4. Transcription confirmed by targeted Reverse Transcription Polymerase Chain Reaction (RT-PCR). Chi Kin Ho, David Mulder & Fiona Brinkman, Simon Fraser University
Sep 9, 2008 PA0143 Pseudomonas aeruginosa PAO1 New product name: purine nucleosidase Nuh. New product name confidence: Class 1. New EC number : 3.2.2.1. New evidence reference (PMID): 16503417. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA0836.2 New CDS gene annotation added. Product name: hypothetical protein. Product name confidence: Class 4. Transcription confirmed by targeted Reverse Transcription Polymerase Chain Reaction (RT-PCR). Chi Kin Ho, David Mulder & Fiona Brinkman, Simon Fraser University
Sep 9, 2008 PA0761 Pseudomonas aeruginosa PAO1 New product name confidence: Class 2. New alternate protein name: L-aspartate oxidase(aerobic/anaerobic) NadB. New evidence reference (PMID): 7737518. New evidence reference (PMID): 6997723. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA1004 Pseudomonas aeruginosa PAO1 New product name confidence: Class 2. New alternate protein name: L-aspartate oxidase (aerobic/anaerobic) NadA. New evidence reference (PMID): 7737518. New evidence reference (PMID): 6997723. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA1514 Pseudomonas aeruginosa PAO1 New product name: ureidoglycolate hydrolaseYbbT. New product name confidence: Class 3. New EC number : 3.5.3.19. New evidence reference (PMID): 16503417. New evidence reference (PMID): 104142. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA1684 Pseudomonas aeruginosa PAO1 New product name: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase MtnD. New product name confidence: Class 2. New EC number : 1.13.11.54. New EC number : 1.13.11.53. New evidence reference (PMID): 15102328. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA1818 Pseudomonas aeruginosa PAO1 New product name: Orn/Arg/Lys decarboxylase LdcC. New product name confidence: Class 2. New EC number : 4.1.1.18. New evidence reference (PMID): 405455. New evidence reference (PMID): 14679195. New evidence reference (PMID): 6768834. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA2080 Pseudomonas aeruginosa PAO1 New product name: kynureninase KynU. New product name confidence: Class 1. New EC number : 3.7.1.3. New evidence reference (PMID): 17337571. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA2366 Pseudomonas aeruginosa PAO1 New alternate gene name: puuD. New product name: uricase PuuD. New product name confidence: Class 2. New EC number : 1.7.3.3. New evidence reference (PMID): 16503417. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA2385 Pseudomonas aeruginosa PAO1 New product name: 3-oxo-C12-homoserine lactone acylase PvdQ. New product name confidence: Class 1. New alternate protein name: C4-homoserine lactone acylase PvdQ. New evidence reference (PMID): 16503417. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA2579 Pseudomonas aeruginosa PAO1 New product name: L-Tryptophan:oxygen 2,3-oxidoreductase (decyclizing) KynA. New product name confidence: Class 1. New EC number : 1.13.11.11. New evidence reference (PMID): 17337571. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA3004 Pseudomonas aeruginosa PAO1 New product name: 5-methylthioadenosine phosphorylase MtnP. New product name confidence: Class 1. New EC number : 2.4.2.28. New evidence reference (PMID): 15102328. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA3169 Pseudomonas aeruginosa PAO1 New product name: 5-methylthioribose-1-phosphate isomerase MtnA. New product name confidence: Class 2. New alternate protein name: probable initiation factor 2 subunit (class 3). New EC number : 5.3.1.23. New evidence reference (PMID): 15102328. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA4425 Pseudomonas aeruginosa PAO1 New product name: sedoheptulose 7-phosphate isomerase GmhA. New product name confidence: Class 2. New evidence reference (PMID): 11751812. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA2227 Pseudomonas aeruginosa PAO1 New gene name: vqsM. New product name: AraC-type transcriptional regulator VqsM. New product name confidence: Class 1. New evidence reference (PMID): 16194239. Literature review. Approved by reference author. Lian-Hui Zhang, Institute of Molecular and Cell Biology, Singapore.
Sep 9, 2008 PA0215 Pseudomonas aeruginosa PAO1 New product name: malonate transporter MadL. New product name confidence: Class 2. New evidence reference (PMID): 9573154. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA0216 Pseudomonas aeruginosa PAO1 New product name: malonate transporter MadM. New product name confidence: Class 2. New evidence reference (PMID): 9573154. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA0313 Pseudomonas aeruginosa PAO1 New product name: L-cysteine transporter of ABC system YecS. New product name confidence: Class 3. New evidence reference (PMID): 4974392. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA0314 Pseudomonas aeruginosa PAO1 New product name: L-cysteine transporter of ABC system FliY. New product name confidence: Class 3. New evidence reference (PMID): 4974392. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA4457 Pseudomonas aeruginosa PAO1 New alternate gene name: kdsD. New product name: arabinose-5-phosphate isomerase KdsD. New product name confidence: Class 2. New EC number : 5.3.1.13. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA5175 Pseudomonas aeruginosa PAO1 New product name: 3,5-bisphosphate nucleotidase CysQ. New product name confidence: Class 2. New EC number : 3.1.3.7. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
Sep 9, 2008 PA1803 Pseudomonas aeruginosa PAO1 New evidence reference (PMID): 17259618. Literature review. Approved by reference author Robert E. W. Hancock, University of British Columbia, Vancouver
Sep 9, 2008 PA5000 Pseudomonas aeruginosa PAO1 New gene name: wapR. New product name: alpha-1,3-rhamnosyltransferase WapR. New product name confidence: Class 1. New function class: Cell wall/LPS/capsule. New evidence reference (PMID): 18178733. Literature review. Approved by reference author. Joseph S. Lam, University of Guelph, Ontario
Sep 9, 2008 PA0705 Pseudomonas aeruginosa PAO1 New gene name: migA. New product name: alpha-1,6-rhamnosyltransferase MigA. New product name confidence: Class 1. New function class: Cell wall/LPS/capsule. New evidence reference (PMID): 18178733. Literature review. Approved by reference author. Joseph S. Lam, University of Guelph, Ontario
Sep 9, 2008 PA3479 Pseudomonas aeruginosa PAO1 New gene name: rhlA. New evidence reference (PMID): 18326581. Literature review. Approved by reference author. Charles O. Rock, St. Jude Chidlrens Research Hospital, Memphis, Tennessee
Sep 9, 2008 PA0867 Pseudomonas aeruginosa PAO1 New gene name: mliC. New product name: membrane-bound lysozyme inhibitor of c-type lysozyme MliC. New product name confidence: Class 1. New function class: adaptation. New function class: protection. New homology: 27% identity with PliC ( S. Enteritidis). New localization: outer membrane (class 2). New evidence reference (PMID): 18369469. Literature review. Approved by reference author. Chris W. Michiels, Katholieke Universiteit Leuven, Leuven, Belgium
Sep 9, 2008 PA4550 Pseudomonas aeruginosa PAO1 New genomic context: co-transcribed as part of the fimU-pilVWXY1Y2E operon. New evidence reference (PMID): 18178737. Literature review. Approved by reference author. Daniel J. Wozniak, Wake Forest University School of Medicine, Winston-Salem, North Carolina
Sep 9, 2008 PA4551 Pseudomonas aeruginosa PAO1 New genomic context: co-transcribed as part of the fimU-pilVWXY1Y2E operon. New evidence reference (PMID): 18178737. Literature review. Approved by reference author. Daniel J. Wozniak, Wake Forest University School of Medicine, Winston-Salem, North Carolina
Sep 9, 2008 PA4552 Pseudomonas aeruginosa PAO1 New genomic context: co-transcribed as part of the fimU-pilVWXY1Y2E operon. New evidence reference (PMID): 18178737. Literature review. Approved by reference author. Daniel J. Wozniak, Wake Forest University School of Medicine, Winston-Salem, North Carolina
Sep 9, 2008 PA4553 Pseudomonas aeruginosa PAO1 New genomic context: co-transcribed as part of the fimU-pilVWXY1Y2E operon. New evidence reference (PMID): 18178737. Literature review. Approved by reference author. Daniel J. Wozniak, Wake Forest University School of Medicine, Winston-Salem, North Carolina
Sep 9, 2008 PA4554 Pseudomonas aeruginosa PAO1 New genomic context: co-transcribed as part of the fimU-pilVWXY1Y2E operon. New evidence reference (PMID): 18178737. Literature review. Approved by reference author. Daniel J. Wozniak, Wake Forest University School of Medicine, Winston-Salem, North Carolina
Sep 9, 2008 PA4555 Pseudomonas aeruginosa PAO1 New genomic context: co-transcribed as part of the fimU-pilVWXY1Y2E operon. New evidence reference (PMID): 18178737. Literature review. Approved by reference author. Daniel J. Wozniak, Wake Forest University School of Medicine, Winston-Salem, North Carolina
Sep 9, 2008 PA4556 Pseudomonas aeruginosa PAO1 New genomic context: co-transcribed as part of the fimU-pilVWXY1Y2E operon. New evidence reference (PMID): 18178737. Literature review. Approved by reference author. Daniel J. Wozniak, Wake Forest University School of Medicine, Winston-Salem, North Carolina
Sep 9, 2008 PA1874 Pseudomonas aeruginosa PAO1 New function class: antibiotics resistance and susceptibility. New genomic context: part of an efflux pump encoded by PA1874-1877. New evidence reference (PMID): 18469108. Literature review. Approved by reference author, Thien-Fah Mah, University of Ottawa, Ottawa, Ontario
Sep 9, 2008 PA1875 Pseudomonas aeruginosa PAO1 New function class: antibiotics resistance and susceptibility. New genomic context: part of an efflux pump encoded by PA1874-1877. New evidence reference (PMID): 18469108. Literature review. Approved by reference author, Thien-Fah Mah, University of Ottawa, Ottawa, Ontario
Sep 9, 2008 PA1876 Pseudomonas aeruginosa PAO1 New function class: antibiotics resistance and susceptibility. New genomic context: part of an efflux pump encoded by PA1874-1877. New evidence reference (PMID): 18469108. Literature review. Approved by reference author, Thien-Fah Mah, University of Ottawa, Ottawa, Ontario
Sep 9, 2008 PA1877 Pseudomonas aeruginosa PAO1 New function class: antibiotics resistance and susceptibility. New genomic context: part of an efflux pump encoded by PA1874-1877. New evidence reference (PMID): 18469108. Literature review. Approved by reference author, Thien-Fah Mah, University of Ottawa, Ottawa, Ontario
Sep 9, 2008 PA1163 Pseudomonas aeruginosa PAO1 New function class: antibiotics resistance and susceptibility. New evidence reference (PMID): 14628055. Literature review. Approved by reference author, Thien-Fah Mah, University of Ottawa, Ottawa, Ontario
Sep 9, 2008 PA5308 Pseudomonas aeruginosa PAO1 New alternate gene name: dadR, dadAX regulator. New alternate protein name: transcriptional activator of dadAX DadR. New evidence reference (PMID): 18192388. Literature review. Approved by reference author. Chung-Dar Lu, Georgia State University, Atlanta, Georgia
Sep 9, 2008 PA0296 Pseudomonas aeruginosa PAO1 New gene name: spuI. New evidence reference (PMID): 12081945. Literature review. Approved by reference author. Chung-Dar Lu, Georgia State University, Atlanta, Georgia
Sep 9, 2008 PA1409 Pseudomonas aeruginosa PAO1 New evidence reference (PMID): 18192388. Literature review. Approved by reference author. Chung-Dar Lu, Georgia State University, Atlanta, Georgia
Sep 9, 2008 PA0321 Pseudomonas aeruginosa PAO1 New evidence reference (PMID): 18192388. Literature review. Approved by reference author. Chung-Dar Lu, Georgia State University, Atlanta, Georgia
Sep 9, 2008 PA2634 Pseudomonas aeruginosa PAO1 New gene name: aceA. New product name: isocitrate lyase AceA. New homology: 72% identical to isocitrate lyase(Colwellia maris). New evidence reference (PMID): 17319879. Literature review. Approved by reference author. Jesus Campos-Garcia, Universidad Michoacana de San Nicolas de Hidalgo, Morelia, Michoacan, Mexico
Sep 9, 2008 PA3014 Pseudomonas aeruginosa PAO1 New alternate gene name: fadB5. New genomic context: PsrA(PA3006) is a negative regulator of the faoAB operon. New evidence reference (PMID): 18524913. Literature review. Approved by reference author. Tung T. Hoang, University of Manoa, Honolulu, HI
Sep 9, 2008 PA3013 Pseudomonas aeruginosa PAO1 New alternate gene name: fadA5. New genomic context: PsrA(PA3006) is a negative regulator of the faoAB operon. New evidence reference (PMID): 18524913. Literature review. Approved by reference author. Tung T. Hoang, University of Manoa, Honolulu, HI
Sep 9, 2008 PA5483 Pseudomonas aeruginosa PAO1 New function class: cell wall/LPS/capsule-adaptation. New function class: protection-secreted factors(toxins. New function class: enzymes. New function class: alginate). New evidence reference (PMID): 17981963. Literature review. Raymond Lo and Fiona S. L. Brinkman, Simon Fraser University
Sep 9, 2008 PA3648 Pseudomonas aeruginosa PAO1 New alternate gene name: opr86. New alternate protein name: outer membrane protein Opr86. New localization: outer membrane (class 1). New evidence reference (PMID): 18390657. Literature review. Raymond Lo and Fiona S. L. Brinkman, Simon Fraser University
48 annotation updates returned