Log of Annotation Updates

3213 annotation updates returned 12345678910..33Next
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Date Locus Tag Strain Description Submitter
Aug 25, 2011 PA3947 Pseudomonas aeruginosa PAO1 New comment : RocR has been shown to have c-di-GMP phosphodiesterase activity and to repress the expression of the cupB and cupC gene clusters.. New comment : Genetic and bacterial two hybrid studies in Pseudomonas aeruginosa PAK have revealed that RocS1-induced expression of the cupB and cupC gene clusters is repressed by RocR. Furthermore, purified RocR has been shown to display phosphodiesterase activity and degrades the second messenger c-di-GMP.. New PubMed reference: 18344366. New PubMed reference: 21205015. Allain Filloux, Imperial College London
Aug 25, 2011 PA0265 Pseudomonas aeruginosa PAO1 New pathway: Polyamine catabolism. New GO Accession: GO:0006598(ISS). New PubMed reference: 21622750. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA0091 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New function class: Protein secretion/export apparatus. New PubMed reference: 20114026. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Jan 25, 2011 PA0090 Pseudomonas aeruginosa PAO1 New product name confidence: Class 2. New PubMed reference: 20114026. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Dec 5, 2012 PA4109 Pseudomonas aeruginosa PAO1 New function class: Antibiotic resistance and susceptibility. New PubMed reference: 22479525,20965918,20594961,16251297. Deepak Balasubramanian, Florida International University
Mar 5, 2012 PA3345 Pseudomonas aeruginosa PAO1 New function class: Motility & Attachment. New PubMed reference: 22128156. New genomic context: PA3347, PA3346, and hptB are organized as an operon (PMID:18256026). Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Aug 25, 2011 PA3761 Pseudomonas aeruginosa PAO1 New gene name: nagE. New PubMed reference: 21169497. Aishwarya Korgaonkar, The University of Texas at Austin, USA
Aug 25, 2011 PALES_12191 Pseudomonas aeruginosa LESB58 New gene name: nagE. New PubMed reference: 21169497. Aishwarya Korgaonkar, The University of Texas at Austin, USA
Jan 28, 2014 PA4737 Pseudomonas aeruginosa PAO1 New comment : Initiation codon of PA4737 overlaps with stop codon of PA4736. This is such that the first and second bases of the initiation codon are shared with the first and second bases of the termination codon. As a result of the tetranucleotide sequence TTGA, which is termed stop-start codon, the translation of the PA4737 gene may be directly linked to that of PA4736 through -1 frame shifting.. Andrew Chibeu, Canadian Research Institute for Food Safety
Jan 25, 2011 PA1720 Pseudomonas aeruginosa PAO1 New comment : The cytoplasmic PscE and PscG chaperones prevent PscF from premature polymerization in the cytoplasm.. New function class: Chaperones & heat shock proteins. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA1718 Pseudomonas aeruginosa PAO1 New comment : The cytoplasmic PscE and PscG chaperones prevent PscF from premature polymerization in the cytoplasm.. New function class: Chaperones & heat shock proteins. New pathway: Type III secretion system. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 10, 2008 PA5418 Pseudomonas aeruginosa PAO1 New comment: NMR analysis shows buildup of labeled sarcosine when soxA transposon mutants are given labeled choline. New evidence reference (PMID): 17951379. New product name confidence: Class 1 (Existing value: Class 2). New pathway: glycine betaine catabolism. New comment: Strains with transposon mutants in any of the soxBDAG genes are unable to grow on choline, glycine betaine, dimethylglcycine or sarcosine. Matthew Wargo and Deborah Hogan, Dartmouth Medical School, USA
Apr 2, 2013 PA1982 Pseudomonas aeruginosa PAO1 New EC Number: 1.1.2.8. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 2, 2013 PA4781 Pseudomonas aeruginosa PAO1 New EC Number: 3.1.4.52. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 2, 2013 PA4108 Pseudomonas aeruginosa PAO1 New EC Number: 3.1.4.52. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 2, 2013 PA0292 Pseudomonas aeruginosa PAO1 New EC Number: 3.5.3.12. New PubMed reference: 11673419. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 2, 2013 PA0288 Pseudomonas aeruginosa PAO1 New EC Number: 3.5.3.17. New GO Accession: GO:0047972(IMP). New PubMed reference: 11673419. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 2, 2013 PA2634 Pseudomonas aeruginosa PAO1 New EC Number: 4.1.3.1. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Sep 5, 2006 PA4890 Pseudomonas aeruginosa PAO1 New evidence reference (PMID): 16573679. New gene name: desT (Existing value: blank). New product name: DesT (Existing value: conserved hypothetical protein). New product name confidence: Class 1 (Existing value: Class 4). New PseudoCAP function class: Transcriptional regulators. Deleting function class: Hypothetical, unclassified, unknown. New comment: DesT negatively regulates both desB (PA4888) and PA4889. Literature Review. Approved by reference author Yong-Mei Zhang, St. Jude Children's Research Hospital, USA.
Dec 5, 2012 PA1781.1 Pseudomonas aeruginosa PAO1 New feature: type = CDS, locus_tag = PA1781.1, start=, end=, strand=, name=nitrogen assimilation leader A (NalA). New gene name: nalA. New PubMed reference: 22493305. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Mar 5, 2012 PA2080 Pseudomonas aeruginosa PAO1 New function class: Amino acid biosynthesis and metabolism. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA0908 Pseudomonas aeruginosa PAO1 New function class: Antibiotic resistance and susceptibility. New PubMed reference: 20679510. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA5288 Pseudomonas aeruginosa PAO1 New function class: Antibiotic resistance and susceptibility. New PubMed reference: 20679510. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA2615 Pseudomonas aeruginosa PAO1 New function class: Antibiotic resistance and susceptibility. New PubMed reference: 20679510. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA4020 Pseudomonas aeruginosa PAO1 New function class: Antibiotic resistance and susceptibility. New PubMed reference: 24041903. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA2649 Pseudomonas aeruginosa PAO1 New function class: Antibiotic resistance and susceptibility. New PubMed reference: 24041903. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 2, 2013 PA5455 Pseudomonas aeruginosa PAO1 New function class: Cell wall / LPS / capsule. New pathway: common polysaccharide antigen (CBA) biosynthesis. New PubMed reference: 23341552. Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada.
Apr 2, 2013 PA5456 Pseudomonas aeruginosa PAO1 New function class: Cell wall / LPS / capsule. New pathway: common polysaccharide antigen (CBA) biosynthesis. New PubMed reference: 23341552. Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada.
Apr 2, 2013 PA5457 Pseudomonas aeruginosa PAO1 New function class: Cell wall / LPS / capsule. New pathway: common polysaccharide antigen (CBA) biosynthesis. New PubMed reference: 23341552. Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada.
Apr 2, 2013 PA5458 Pseudomonas aeruginosa PAO1 New function class: Cell wall / LPS / capsule. New pathway: common polysaccharide antigen (CBA) biosynthesis. New PubMed reference: 23341552. Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada.
Apr 2, 2013 PA5459 Pseudomonas aeruginosa PAO1 New function class: Cell wall / LPS / capsule. New pathway: common polysaccharide antigen (CBA) biosynthesis. New PubMed reference: 23341552. Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada.
Mar 5, 2012 PA0943 Pseudomonas aeruginosa PAO1 New function class: Protein secretion/export apparatus. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jul 1, 2006 PA2891 Pseudomonas aeruginosa PAO1 New gene name: atuF. New product name: geranyl-CoA carboxylase, alpha-subunit (biotin-containing). New product name rating: Class 1. New subcellular localization rating: Class 1. New evidence reference: Forster-Fromme, Karin , Hoschle, Birgit , Jendrossek, Dieter Identification of Genes and Proteins Involved in Catabolism of Acyclic Terpenes and Leucine/Isovalerate in Pseudomonas aeruginosa (unpublished). New evidence reference (PubMed ID):16272386. New evidence reference (PubMed ID): 16517656. New genomic context: Part of atuRABCDEFGH cluster. New homology: 50% identity with PP4067 [Pseudomonas putida]. Karin Forster-Fromme, Birgit Hoschle and Dieter Jendrossek, Institute for Microbiology, Germany. Jesus, Campos-Garcia, Universidad Michoacana, Mexico.
Aug 25, 2011 PA0131 Pseudomonas aeruginosa PAO1 New gene name: bauB. New product name confidence: Class 1. New function class: Carbon compound catabolism. New pathway: Polyamine catabolism. New pathway: Beta-alanine catabolism. New pathway: Spermidine catabolism. New pathway: Diaminopropane catabolism. New GO Accession: GO:0006598(IDA). New GO Accession: GO:0046203(IDA). New PubMed reference: 21622750. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Mar 5, 2012 PA3530 Pseudomonas aeruginosa PAO1 New gene name: bfd. New product name confidence: Class 1. New synonym for CDS: Bfd. New PubMed reference: 17915950. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Mar 5, 2012 PA0470 Pseudomonas aeruginosa PAO1 New gene name: fiuA. New function class: Transcriptional regulators. New function class: Membrane proteins. New homology :  31.6% identity with the ferrichrome receptor FhuA of E. coli. New PubMed reference: 16484199. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA5147 Pseudomonas aeruginosa PAO1 New gene name: mutM. New product name confidence: Class 1. New PubMed reference: 12445642. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA4400 Pseudomonas aeruginosa PAO1 New gene name: mutT. New product name confidence: Class 1. New PubMed reference: 12445642. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA0357 Pseudomonas aeruginosa PAO1 New gene name: mutY. New product name confidence: Class 1. New PubMed reference: 12445642. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Aug 25, 2011 PA5301 Pseudomonas aeruginosa PAO1 New gene name: pauR. New product name confidence: Class 1. New function class: Carbon compound catabolism. New pathway: Polyamine catabolism. New GO Accession: GO:0006598(IDA). New PubMed reference: 21622750. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA5498 Pseudomonas aeruginosa PAO1 New gene name: znuA. New product name confidence: Class 1. New function class: Transport of small molecules. New PubMed reference: 24086521. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Dec 5, 2012 PA4999 Pseudomonas aeruginosa PAO1 New GO Accession: GO:0008754(EXP). New PubMed reference: 17697256,20824106. Salim Islam, University of Guelph
Jan 25, 2011 PA1246 Pseudomonas aeruginosa PAO1 New pathway: Apr type I secretion system. New PubMed reference: 1427098. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA1247 Pseudomonas aeruginosa PAO1 New pathway: Apr type I secretion system. New PubMed reference: 1427098. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA1248 Pseudomonas aeruginosa PAO1 New pathway: Apr type I secretion system. New PubMed reference: 1427098. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA1249 Pseudomonas aeruginosa PAO1 New pathway: Apr type I secretion system. New PubMed reference: 1832151. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA1994 Pseudomonas aeruginosa PAO1 New pathway: glycolipid metabolism. New PubMed reference: 20944213. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA1706 Pseudomonas aeruginosa PAO1 New pathway: Type III secretion system. New PubMed reference: 15271936. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA1719 Pseudomonas aeruginosa PAO1 New pathway: Type III secretion system. New PubMed reference: 16239085. New PubMed reference: 17307856. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA0026 Pseudomonas aeruginosa PAO1 New pathway: Xcp type II secretion system. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA0852 Pseudomonas aeruginosa PAO1 New pathway: Xcp type II secretion system. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA2862 Pseudomonas aeruginosa PAO1 New pathway: Xcp type II secretion system. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA2939 Pseudomonas aeruginosa PAO1 New pathway: Xcp type II secretion system. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA3296 Pseudomonas aeruginosa PAO1 New pathway: Xcp type II secretion system. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA4813 Pseudomonas aeruginosa PAO1 New pathway: Xcp type II secretion system. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA0844 Pseudomonas aeruginosa PAO1 New pathway: Xcp type II secretion system. New PubMed reference: 11726509. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA3319 Pseudomonas aeruginosa PAO1 New pathway: Xcp type II secretion system. New PubMed reference: 11726509. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA4175 Pseudomonas aeruginosa PAO1 New pathway: Xcp type II secretion system. New PubMed reference: 18203852. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA1948 Pseudomonas aeruginosa PAO1 New pathway: Xcp type II secretion system. New PubMed reference: 7901198. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA1871 Pseudomonas aeruginosa PAO1 New pathway: Xcp type II secretion system. New PubMed reference: 9642203. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA3724 Pseudomonas aeruginosa PAO1 New pathway: Xcp type II secretion system. New PubMed reference: 9642203. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Mar 5, 2012 PA1183 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New GO Accession: GO:0006835(IDA). New PubMed reference: 21725012. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Nov 6, 2013 PA3699 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New PubMed reference: 23861975. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Dec 5, 2012 PA4997 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New comment : msbA Is Essential to the Viability of P. aeruginosa. New PubMed reference: 17644517. Salim Islam, University of Guelph
Jan 28, 2014 PA0102 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Adaptation, Protection. New PubMed reference: 23728627. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA2053 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Adaptation, Protection. New PubMed reference: 23728627. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA4676 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Adaptation, Protection. New PubMed reference: 23728627. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA3005 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Antibiotic resistance and susceptibility. New function class: Amino acid biosynthesis and metabolism. New EC Number: 3.2.1.52. New PubMed reference: 20566764. New PubMed reference: 19273679. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA1801 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Antibiotic resistance and susceptibility. New function class: Motility & Attachment. New PubMed reference: 22123702. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA0355 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Antibiotic resistance and susceptibility. New function class: Motility & Attachment. New function class: Cell wall / LPS / capsule. New PubMed reference: 22123702. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Mar 5, 2012 PA3347 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Motility & Attachment. New function class: Two-component regulatory systems. New PubMed reference: 22128156. New genomic context: PA3347, PA3346, and hptB are organized as an operon (PMID:18256026). Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA5345 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Transcriptional regulators. New PubMed reference: 16105671. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Mar 5, 2012 PA3697 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Transcriptional regulators. New PubMed reference: 18043907. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Mar 5, 2012 PA0482 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New GO Accession: GO:0004474(IDA). New PubMed reference: 19549344. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Nov 6, 2013 PA0672 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New GO Accession: GO:0042167(IMP). New PubMed reference: 16533806. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA4640 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New PubMed reference: 12480887. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA3531 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New PubMed reference: 21574546. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 28, 2014 PA5204 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New PubMed reference: 22447897. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 2, 2013 PA0768 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New PubMed reference: 22730125. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Mar 5, 2012 PA2003 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New synonym for CDS: D-beta-hydroxybutyrate dehydrogenase. New GO Accession: GO:0003858(IDA). New PubMed reference: 20052585. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Aug 25, 2011 PA0297 Pseudomonas aeruginosa PAO1 New product name confidence: Class 2. New synonym for CDS: pauD1. New function class: Carbon compound catabolism. New pathway: Polyamine catabolism. New GO Accession: GO:0006598(ISS). New PubMed reference: 21622750. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Mar 5, 2012 PA0011 Pseudomonas aeruginosa PAO1 New product name: 2-OH-lauroyltransferase. New product name confidence: Class 2. New function class: Antibiotic resistance and susceptibility. New function class: Adaptation, Protection. New GO Accession: GO:0008913(ISS). New PubMed reference: 22146126. New PubMed reference: 8662613. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Aug 25, 2011 PA0130 Pseudomonas aeruginosa PAO1 New product name: 3-Oxopropanoate dehydrogenase. New gene name: bauC. New product name confidence: Class 1. New function class: Carbon compound catabolism. New pathway: Polyamine catabolism. New pathway: Beta-alanine catabolism. New pathway: Spermidine catabolism. New pathway: Diaminopropane catabolism. New GO Accession: GO:0006598(IDA). New GO Accession: GO:0046203(IDA). New PubMed reference: 21622750. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA3004 Pseudomonas aeruginosa PAO1 New product name: 5'-methylthioinosine phosphorylase. New product name confidence: Class 1. New PubMed reference: 21197954. Department of Biochemistry, Albert Einstein College of Medicine
Mar 5, 2012 PA4921 Pseudomonas aeruginosa PAO1 New product name: acetylcholinesterase, AchE. New gene name: achE. New product name confidence: Class 1. New EC Number: 3.1.1.7. New GO Accession: GO:0003990(IDA). New PubMed reference: 22192836. Angela T Lisa, Universidad Nacional de Río Cuarto, Argentina
Aug 25, 2011 PA0305 Pseudomonas aeruginosa PAO1 New product name: acylhomoserine lactone acylase B. New gene name: hacB. New product name confidence: Class 1. New function class: Carbon compound catabolism. New PubMed reference: 21372094. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Aug 25, 2011 PA4653 Pseudomonas aeruginosa PAO1 New product name: Adhesin-like protein CupE6. New gene name: cupE6. New product name confidence: Class 1. New comment : The cupE gene cluster encodes a chaperone usher pathway that is homologous to the A. baumanii csu gene cluster. Activation of the cupE genes leads to the production and assembly of CupE fimbriae on the cell surface. These fimbriae are important in early and late stages of biofilm formation. The expression of the cupE gene cluster is controlled by the two-component system PprA-PprB, and binding of PprB to the cupE1 promoter has been confirmed by EMSA.. New function class: Cell wall / LPS / capsule. New function class: Motility & Attachment. New PubMed reference: 21091863. Allain Filloux, Imperial College London
Nov 6, 2013 PA0603 Pseudomonas aeruginosa PAO1 New product name: AgtA. New gene name: agtA. New product name confidence: Class 1. New PubMed reference: 23982201. Chung-Dar Lu, Georgia State University, Atlanta, USA
Nov 6, 2013 PA0604 Pseudomonas aeruginosa PAO1 New product name: AgtB. New gene name: agtB. New product name confidence: Class 1. New PubMed reference: 23982201. Chung-Dar Lu, Georgia State University, Atlanta, USA
Nov 6, 2013 PA0605 Pseudomonas aeruginosa PAO1 New product name: AgtC. New gene name: agtC. New product name confidence: Class 1. New PubMed reference: 23982201. Chung-Dar Lu, Georgia State University, Atlanta, USA
Nov 6, 2013 PA0606 Pseudomonas aeruginosa PAO1 New product name: AgtD. New gene name: agtD. New product name confidence: Class 1. New PubMed reference: 23982201. Chung-Dar Lu, Georgia State University, Atlanta, USA
Aug 25, 2011 PA5312 Pseudomonas aeruginosa PAO1 New product name: Aldehyde dehydrogenase. New gene name: pauC. New product name confidence: Class 2. New function class: Carbon compound catabolism. New pathway: Polyamine catabolism. New GO Accession: GO:0006598(ISS). New PubMed reference: 21622750. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Dec 5, 2012 PA0848 Pseudomonas aeruginosa PAO1 New product name: alkyl hydroperoxide reductase , AhpB. New gene name: ahpB. New PubMed reference: 22275523. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Mar 5, 2012 PA3529 Pseudomonas aeruginosa PAO1 New product name: alkylhydroperoxide reductase C. New product name confidence: Class 1. New comment : Confirmed by Hare et al. (2011) as a functional AhpC paralog in P. aeruginosa PAO1.. New GO Accession: GO:0008785(IDA). New PubMed reference: 21674802. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Aug 25, 2011 PA0129 Pseudomonas aeruginosa PAO1 New product name: Amino acid permease. New gene name: bauD. New product name confidence: Class 1. New function class: Carbon compound catabolism. New pathway: Polyamine catabolism. New pathway: Beta-alanine catabolism. New pathway: Spermidine catabolism. New pathway: Diaminopropane catabolism. New GO Accession: GO:0006598(IDA). New GO Accession: GO:0046203(IDA). New PubMed reference: 21622750. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Aug 25, 2011 PA2041 Pseudomonas aeruginosa PAO1 New product name: Amino acid permease. New product name confidence: Class 2. New function class: Carbon compound catabolism. New pathway: Polyamine catabolism. New GO Accession: GO:0006598(ISS). New PubMed reference: 21622750. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Dec 5, 2012 PA4219 Pseudomonas aeruginosa PAO1 New product name: AmpO. New gene name: ampO. New product name confidence: Class 2. New function class: Antibiotic resistance and susceptibility. New PubMed reference: 21192796. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA4218 Pseudomonas aeruginosa PAO1 New product name: AmpP. New gene name: ampP. New function class: Antibiotic resistance and susceptibility. New PubMed reference: 21192796. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 2, 2013 PA2511 Pseudomonas aeruginosa PAO1 New product name: AntR. New gene name: antR. New PubMed reference: 18424436. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA1245 Pseudomonas aeruginosa PAO1 New product name: AprX. New gene name: aprX. New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 2. New function class: Secreted Factors (toxins, enzymes, alginate). New pathway: Apr type I secretion system. New PubMed reference: 11179678. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
3213 annotation updates returned 12345678910..33Next