Log of Annotation Updates

3213 annotation updates returned 12345678910..33Next
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Date Locus Tag Strain Description Submitter
Sep 30, 2005 PA0005 Pseudomonas aeruginosa PAO1 New gene name: lptA. New protein name: lysophosphatidic acid acyltransferase, LptA. New protein name confidence: Class 1. New alternate gene name: plsC. New evidence reference (PMID:16079332). New homology: 28% identity with PlsC [Escherichia coli] ; 36% identity with NlaB [Nesseria meningitidis]. Christine Baysse and Fergal OGara, University College Cork, Ireland.
Sep 5, 2006 PA0005 Pseudomonas aeruginosa PAO1 New EC number: 2.3.1.51. New pathway: phospholipid biosynthesis. Mapped from BRENDA Comprehensive Enzyme Information System (http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=2.3.1.51&organism=) and MetaCyc (http://biocyc.org/META/NEW-IMAGE? type=REACTION&object=1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN). Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada.
Apr 29, 2002 PA0009 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Cytoplasmic. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Apr 29, 2002 PA0011 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Inner membrane protein. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Mar 5, 2012 PA0011 Pseudomonas aeruginosa PAO1 New product name: 2-OH-lauroyltransferase. New product name confidence: Class 2. New function class: Antibiotic resistance and susceptibility. New function class: Adaptation, Protection. New GO Accession: GO:0008913(ISS). New PubMed reference: 22146126. New PubMed reference: 8662613. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 20, 2017 PA0011 Pseudomonas aeruginosa PAO1 New gene name: htrB1. New product name: HtrB1. New product name confidence: Class 1. New PubMed ID: 27746380. New PubMed ID: 26223882. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 20, 2017 PA0011 Pseudomonas aeruginosa PAO1 New product name: acyltransferase HtrB1. New product name synonym: 2-OH-lauroyltransferase. New PubMed ID: 27746380. New PubMed ID: 26223882. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Nov 24, 2014 PA0020 Pseudomonas aeruginosa PAO1 New gene name: tsaP. New product name name: T4P secretin-associated protein TsaP. New product name confidence: Class 2. New PubMed ID: 24556993. Lori Burrows, McMaster University, Canada
May 12, 2005 PA0026 Pseudomonas aeruginosa PAO1 New gene name: plcB. New protein name: phospholipase C, PlcB. New protein name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New evidence reference: 15306013. New structure feature: 3 His residues are involved in coordinating three zinc ions in the active site. The region encompassing the active site shares limited, but significant similarity to the zinc dependent PlCs of Gram-positive bacteria, including Bacillus cereus, Listeria monocytogenes (PlcB), Clostridium perfringens (alpha toxin). New genomic context: PA0026, PA0027 & PA0028 constitute an operon. New comment: PlcB is required for directed twitching motility up a gradient of phosphatidylcholine (PC), or phosphatidylethanolamine (PE) with specific type of fatty acid residues. PlcB can hyrolyse both PC and PE, and secreted via the Sec pathway. Proteins encoded by PA0027 & PA0028 are required for the proper folding (PA0027) of PlcB and to chaperone (PA0028) it through the inner and outer membrane. Genevieve Ball, Adam P. Parker, Fiona S.L. Brinkman, Alain Filloux, Raymond C. Lo., Michael L. Vasil, Adriana I. Vasil, Paula J. Wilderman
Sep 27, 2010 PA0026 Pseudomonas aeruginosa PAO1 Removed double space from product name. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 PA0026 Pseudomonas aeruginosa PAO1 New pathway: Xcp type II secretion system. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Nov 24, 2014 PA0030 Pseudomonas aeruginosa PAO1 New gene name: cosX. New product name name: CosX. New product name confidence: Class 2. New PubMed ID: 23763788. New comment: Choline-O-sulfate (COS)-specific binding protein, interacting with CbcVW to import COS, which will be hydrolyzed into choline. Chiliang Chen and Gwyn A. Beattie, Iowa State University
Aug 25, 2011 PA0033 Pseudomonas aeruginosa PAO1 New product name: Histidine phosphotransfer protein HptC. New gene name: hptC. New product name confidence: Class 2. New function class: Two-component regulatory systems. New GO Accession: GO:0009927(ISS). New PubMed reference: 11121759. Allain Filloux, Imperial College London
Jul 29, 2010 PA0036 Pseudomonas aeruginosa PAO1 New subcellular localization: Cytoplasmic. New subcellular localization confidence: Class 1. New evidence reference (PMID): 20472543. Nancy Yu, Brinkman Lab, Simon Fraser University, Canada
Apr 29, 2002 PA0037 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Cytoplasmic. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Mar 1, 2006 PA0041 Pseudomonas aeruginosa PAO1 New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New evidence reference (PubMed ID) to support subcellular localization confidence: 12724392 Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada. Based on literature review.
Mar 1, 2006 PA0044 Pseudomonas aeruginosa PAO1 New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New evidence reference (PubMed ID) to support subcellular localization confidence: 98037517 Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada. Based on literature review.
May 30, 2002 PA0051 Pseudomonas aeruginosa PAO1 Protein name changed from probable glutamine amidotransferase to the new protein name: potential phenazine-modifying enzyme. New gene name: phzH. New pathway: Phenazine biosynthesis. New structure features: 2 Pfam protein motifs: glutamine amidotransferase class II signature(residues 43 to 153), asparagine synthetase signature(residues 199 to 608). New evidence reference (PubMed ID): 11591691. Raymond C. Lo and Fiona S.L. Brinkman, Simon Fraser University, Canada (based on literature review)
Apr 2, 2013 PA0058 Pseudomonas aeruginosa PAO1 New product name: DsbM. New gene name: dsbM. New product name confidence: Class 1. New function class: Antibiotic resistance and susceptibility. New PubMed reference: 23274979. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jul 29, 2010 PA0059 Pseudomonas aeruginosa PAO1 New subcellular localization: Cytoplasmic. New subcellular localization confidence: Class 1. New evidence reference (PMID): 20472543. Nancy Yu, Brinkman Lab, Simon Fraser University, Canada
Jul 29, 2010 PA0066 Pseudomonas aeruginosa PAO1 New subcellular localization: Cytoplasmic. New subcellular localization confidence: Class 1. New evidence reference (PMID): 20472543. Nancy Yu, Brinkman Lab, Simon Fraser University, Canada
Apr 29, 2002 PA0067 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Cytoplasmic. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Jan 25, 2011 PA0070 Pseudomonas aeruginosa PAO1 New product name: TagQ1. New gene name: tagQ1. New product name confidence: Class 2. New function class: Protein secretion/export apparatus. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Jan 25, 2011 PA0071 Pseudomonas aeruginosa PAO1 New product name: TagR1. New gene name: tagR1. New product name confidence: Class 1. New subcellular localization: Periplasmic. New subcellular localization confidence: Class 1. New function class: Protein secretion/export apparatus. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New PubMed reference: 19400797. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Jan 25, 2011 PA0072 Pseudomonas aeruginosa PAO1 New product name: TagS1. New gene name: tagS1. New product name confidence: Class 2. New function class: Protein secretion/export apparatus. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Jan 25, 2011 PA0073 Pseudomonas aeruginosa PAO1 New product name: TagT1. New gene name: tagT1. New product name confidence: Class 2. New function class: Protein secretion/export apparatus. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
May 1, 2009 PA0074 Pseudomonas aeruginosa PAO1 New function class: Protein secretion/export apparatus. New evidence reference (PMID): 16763151. New evidence reference (PMID): 17558390. New genomic context: Part of Hcp1 secretion island I (HSI-I). Literature review. Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada
Jan 25, 2011 PA0074 Pseudomonas aeruginosa PAO1 New synonym for gene: tagE1. New synonym for CDS: TagE1. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
May 1, 2009 PA0075 Pseudomonas aeruginosa PAO1 New gene name: pppA. New product name: PppA. New product name confidence: Class 1. New function class: Protein secretion/export apparatus. New evidence reference (PMID): 17558395. New genomic context: Part of Hcp1 secretion island I (HSI-I). Literature review. Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada
Jan 25, 2011 PA0075 Pseudomonas aeruginosa PAO1 New synonym for gene: tagG1. New synonym for CDS: TagG1. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Jan 25, 2011 PA0076 Pseudomonas aeruginosa PAO1 New product name: TagF1. New gene name: tagF1. New product name confidence: Class 2. New function class: Protein secretion/export apparatus. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
May 1, 2009 PA0077 Pseudomonas aeruginosa PAO1 New gene name: icmF1. New product name: IcmF1. New product name confidence: Class 2. New function class: Protein secretion/export apparatus. New evidence reference (PMID): 16763151. New genomic context: Part of Hcp1 secretion island I (HSI-I). Literature review. Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada
Jan 25, 2011 PA0077 Pseudomonas aeruginosa PAO1 New product name: TssM1. New gene name: tssM1. New product name confidence: Class 2. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Jan 25, 2011 PA0078 Pseudomonas aeruginosa PAO1 New product name: TssL1. New gene name: tssL1. New product name confidence: Class 2. New function class: Protein secretion/export apparatus. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Jan 25, 2011 PA0079 Pseudomonas aeruginosa PAO1 New product name: TssK1. New gene name: tssK1. New product name confidence: Class 2. New function class: Protein secretion/export apparatus. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Jan 25, 2011 PA0080 Pseudomonas aeruginosa PAO1 New product name: TssJ1. New gene name: tssJ1. New product name confidence: Class 2. New function class: Protein secretion/export apparatus. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
May 1, 2009 PA0081 Pseudomonas aeruginosa PAO1 New gene name: fha1. New product name: Fha1. New product name confidence: Class 1. New function class: Protein secretion/export apparatus. New evidence reference (PMID): 17558395. Literature review. Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada
Jan 25, 2011 PA0081 Pseudomonas aeruginosa PAO1 New PubMed reference: 20114026. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Jan 25, 2011 PA0082 Pseudomonas aeruginosa PAO1 New product name: TssA1. New gene name: tssA1. New product name confidence: Class 2. New function class: Protein secretion/export apparatus. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Jan 20, 2017 PA0082 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New PubMed ID: 27288401. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jul 29, 2010 PA0083 Pseudomonas aeruginosa PAO1 New subcellular localization: Cytoplasmic. New subcellular localization confidence: Class 1. New evidence reference (PMID): 20472543. Nancy Yu, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 PA0083 Pseudomonas aeruginosa PAO1 New product name: TssB1. New gene name: tssB1. New product name confidence: Class 2. New function class: Protein secretion/export apparatus. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Jan 25, 2011 PA0084 Pseudomonas aeruginosa PAO1 New product name: TssC1. New gene name: tssC1. New product name confidence: Class 2. New function class: Protein secretion/export apparatus. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
May 1, 2009 PA0085 Pseudomonas aeruginosa PAO1 New gene name: hcp1. New product name: Hcp1. New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New function class: Secreted Factors (toxins, enzymes, alginate). New evidence reference (PMID): 16763151. New genomic context: Part of Hcp1 secretion island I (HSI-I). Literature review. Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada
Jan 25, 2011 PA0085 Pseudomonas aeruginosa PAO1 New PubMed reference: 20114026. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Jan 25, 2011 PA0086 Pseudomonas aeruginosa PAO1 New product name: TagJ1. New gene name: tagJ1. New product name confidence: Class 2. New function class: Protein secretion/export apparatus. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Jan 25, 2011 PA0087 Pseudomonas aeruginosa PAO1 New product name: TssE1. New gene name: tssE1. New product name confidence: Class 2. New function class: Protein secretion/export apparatus. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Jan 25, 2011 PA0088 Pseudomonas aeruginosa PAO1 New product name: TssF1. New gene name: tssF1. New product name confidence: Class 2. New function class: Protein secretion/export apparatus. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Jan 25, 2011 PA0089 Pseudomonas aeruginosa PAO1 New product name: TssG1. New gene name: tssG1. New product name confidence: Class 2. New function class: Protein secretion/export apparatus. New pathway: Hcp secretion island I (HSI-I) type VI secretion system. New PubMed reference: 20114026. New PubMed reference: 17660433. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
May 1, 2009 PA0090 Pseudomonas aeruginosa PAO1 New gene name: clpV1. New product name: ClpV1. New product name confidence: Class 1. New function class: Protein secretion/export apparatus. New evidence reference (PMID): 16763151. New genomic context: Part of Hcp1 secretion island I (HSI-I). Literature review. Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada
Jan 25, 2011 PA0090 Pseudomonas aeruginosa PAO1 New product name confidence: Class 2. New PubMed reference: 20114026. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
May 1, 2009 PA0091 Pseudomonas aeruginosa PAO1 New gene name: vgrG1. New product name: VgrG1. New product name confidence: Class 2. New evidence reference (PMID): 16763151. New genomic context: Part of Hcp1 secretion island I (HSI-I). Literature review. Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada
Jan 25, 2011 PA0091 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New function class: Protein secretion/export apparatus. New PubMed reference: 20114026. New genomic context: Hcp secretion island I (HSI-I). Joseph Mougous and Rachel Hood, Department of Microbiology, University of Washington, Seattle, WA
Nov 24, 2014 PA0091 Pseudomonas aeruginosa PAO1 New synonym for gene: vgrG1a. New synonym for product: VgrG1a. New PubMed ID: 21325275. Luke Allsopp and Alain Filloux, Imperial College.
Jan 20, 2017 PA0091 Pseudomonas aeruginosa PAO1 New PubMed ID: 26456113. John Whitney, University of Washington School of Medicine, USA
Nov 24, 2014 PA0092 Pseudomonas aeruginosa PAO1 New gene name: tsi6. New product name name: Tsi6. New product name confidence: Class 1. New PubMed ID: 24589350. New PseudoCAP function class: Adaptation, Protection. John Whitney, University of Washington School of Medicine, USA
Jan 20, 2017 PA0092 Pseudomonas aeruginosa PAO1 New PubMed ID: 26456113. John Whitney, University of Washington School of Medicine, USA
Nov 24, 2014 PA0093 Pseudomonas aeruginosa PAO1 New gene name: tse6. New product name name: Tse6. New product name confidence: Class 1. New PubMed ID: 24589350. New PseudoCAP function class: Secreted Factors (toxins, enzymes, alginate). John Whitney, University of Washington School of Medicine, USA
Jan 20, 2017 PA0093 Pseudomonas aeruginosa PAO1 New PubMed ID: 26456113. John Whitney, University of Washington School of Medicine, USA
Jan 20, 2017 PA0094 Pseudomonas aeruginosa PAO1 New gene name: eagT6. New product name: EagT6. New product name confidence: Class 1. New PubMed ID: 26456113. John Whitney, University of Washington School of Medicine, USA
Jan 28, 2014 PA0102 Pseudomonas aeruginosa PAO1 New product name confidence: Class 1. New function class: Adaptation, Protection. New PubMed reference: 23728627. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 29, 2002 PA0106 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Inner membrane protein. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Apr 29, 2002 PA0108 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Inner membrane protein. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Apr 29, 2002 PA0113 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Inner membrane protein. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Jul 29, 2010 PA0114 Pseudomonas aeruginosa PAO1 New gene name: senC. New product name: SenC. New product name confidence: Class 1. New evidence reference (PMID): 19659575. Literature review. Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada
Apr 29, 2002 PA0119 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Inner membrane protein. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Aug 25, 2011 PA0122 Pseudomonas aeruginosa PAO1 New product name: rahU. New gene name: rahU. New product name confidence: Class 1. New function class: Adaptation, Protection. New PubMed reference: 21679933. New PubMed reference: 21704311. New PubMed reference: 18227268. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 29, 2002 PA0129 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Inner membrane protein. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Aug 25, 2011 PA0129 Pseudomonas aeruginosa PAO1 New product name: Amino acid permease. New gene name: bauD. New product name confidence: Class 1. New function class: Carbon compound catabolism. New pathway: Polyamine catabolism. New pathway: Beta-alanine catabolism. New pathway: Spermidine catabolism. New pathway: Diaminopropane catabolism. New GO Accession: GO:0006598(IDA). New GO Accession: GO:0046203(IDA). New PubMed reference: 21622750. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Aug 25, 2011 PA0130 Pseudomonas aeruginosa PAO1 New product name: 3-Oxopropanoate dehydrogenase. New gene name: bauC. New product name confidence: Class 1. New function class: Carbon compound catabolism. New pathway: Polyamine catabolism. New pathway: Beta-alanine catabolism. New pathway: Spermidine catabolism. New pathway: Diaminopropane catabolism. New GO Accession: GO:0006598(IDA). New GO Accession: GO:0046203(IDA). New PubMed reference: 21622750. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Aug 25, 2011 PA0131 Pseudomonas aeruginosa PAO1 New gene name: bauB. New product name confidence: Class 1. New function class: Carbon compound catabolism. New pathway: Polyamine catabolism. New pathway: Beta-alanine catabolism. New pathway: Spermidine catabolism. New pathway: Diaminopropane catabolism. New GO Accession: GO:0006598(IDA). New GO Accession: GO:0046203(IDA). New PubMed reference: 21622750. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Nov 24, 2014 PA0131 Pseudomonas aeruginosa PAO1 New product name name: BauB. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Aug 25, 2011 PA0132 Pseudomonas aeruginosa PAO1 New product name: Beta-alanine:pyruvate transaminase. New gene name: bauA. New product name confidence: Class 1. New function class: Carbon compound catabolism. New pathway: Polyamine catabolism. New pathway: Beta-alanine catabolism. New pathway: Spermidine catabolism. New pathway: Diaminopropane catabolism. New GO Accession: GO:0006598(IDA). New GO Accession: GO:0046203(IDA). New PubMed reference: 21622750. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Aug 25, 2011 PA0133 Pseudomonas aeruginosa PAO1 New product name: BauR. New gene name: bauR. New product name confidence: Class 1. New function class: Carbon compound catabolism. New pathway: Beta-alanine catabolism. New GO Accession: GO:0006598(IDA). New GO Accession: GO:0046203(IDA). New PubMed reference: 21622750. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Aug 2, 2006 PA0134 Pseudomonas aeruginosa PAO1 New EC number: 3.5.4.3. Mapped from ExPASy proteomics server of the Swiss Institute of Bioinformatics (http://ca.expasy.org/enzyme/3.5.4.3) Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada.
Apr 29, 2002 PA0136 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Inner membrane-associated. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Apr 29, 2002 PA0140 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Cytoplasmic. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Apr 29, 2002 PA0143 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on experimental data. Localization: Periplasmic. Localization Rating: Class 1. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
May 8, 2002 PA0143 Pseudomonas aeruginosa PAO1 New protein sequence and nucleotide sequence (note: Only annotation changed. This is a case where error in nucleotide sequence was found earlier; however only the downloadable nucleotide and protein sequence files were corrected but not the annotation.) Chris Fields & Gerard O'Donovan, University of North Texas, Denton, Texas, USA
Sep 9, 2008 PA0143 Pseudomonas aeruginosa PAO1 New product name: purine nucleosidase Nuh. New product name confidence: Class 1. New EC number : 3.2.2.1. New evidence reference (PMID): 16503417. New evidence reference (PMID): 18192387. Literature review. Approved by reference authors, Matthew A. Oberhardt and Jason A. Papin, University of Virginia Health System, Charlottesville, Virginia
May 12, 2006 PA0144 Pseudomonas aeruginosa PAO1 New structure feature: Manually-identified twin arginine transporter (TAT) motif (MSRSNGSSSRRTFLR) Lewenza S, Gardy JL, Brinkman FS, Hancock RE
Mar 5, 2012 PA0148 Pseudomonas aeruginosa PAO1 New product name: adenine deaminase. New GO Accession: GO:0000034(IDA). New PubMed reference: 21710971. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
May 8, 2015 PA0150 Pseudomonas aeruginosa PAO1 New product name: anti-sigma factor. New product name confidence: Class 2. New PubMed ID: 18086184. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 29, 2002 PA0151 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Outer membrane protein. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Aug 2, 2006 PA0153 Pseudomonas aeruginosa PAO1 New EC number: 1.13.11.3. Mapped from ExPASy proteomics server of the Swiss Institute of Bioinformatics (http://ca.expasy.org/enzyme/1.13.11.3) Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada.
Aug 2, 2006 PA0154 Pseudomonas aeruginosa PAO1 New EC number: 1.13.11.3. Mapped from ExPASy proteomics server of the Swiss Institute of Bioinformatics (http://ca.expasy.org/enzyme/1.13.11.3) Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada.
Jan 10, 2008 PA0156 Pseudomonas aeruginosa PAO1 New gene name: triA (Existing value: blank). New product name: Resistance-Nodulation-Cell Division (RND) triclosan efflux membrane fusion protein, TriA (Existing value: probable Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor). New product name confidence: Class 1 (Existing value: Class 3). New PseudoCAP function class: Antibiotic resistance and susceptibility. New PseudoCAP function class: Membrane Proteins. New evidence reference (PMID): 17720796. Herbert P. Schweizer, Colorado State University, USA
Jan 10, 2008 PA0157 Pseudomonas aeruginosa PAO1 New gene name: triB (Existing value: blank). New product name: Resistance-Nodulation-Cell Division (RND) triclosan efflux membrane fusion protein, TriB (Existing value: probable Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor). New product name confidence: Class 1 (Existing value: Class 3). New PseudoCAP function class: Antibiotic resistance and susceptibility. New PseudoCAP function class: Membrane Proteins. New evidence reference (PMID): 17720796. Herbert P. Schweizer, Colorado State University, USA
Apr 29, 2002 PA0158 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Inner membrane protein. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Jan 10, 2008 PA0158 Pseudomonas aeruginosa PAO1 New evidence reference (PMID): 17720796. New gene name: triC (Existing value: blank). New product name confidence: Class 1 (Existing value: Class 3). New PseudoCAP function class: Antibiotic resistance and susceptibility. New product name: Resistance-Nodulation-Cell Division (RND) triclosan efflux transporter, TriC (Existing value: probable Resistance-Nodulation-Cell Division (RND) efflux transporter). Herbert P. Schweizer, Colorado State University, USA
Apr 29, 2002 PA0162 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Outer membrane protein. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Jul 16, 2006 PA0162 Pseudomonas aeruginosa PAO1 New gene name: opdC (previously blank). Removed alternate gene name of opdC. New product name: histidine porin OpdC (previously named probable porin). New product name rating: Class 1 (previous product name rating was Class 3). New evidence reference(PMID): 16352820. Sandeep Tamber and Bob Hancock, University of British Columbia
Apr 29, 2002 PA0164 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Periplasmic. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Aug 2, 2006 PA0164 Pseudomonas aeruginosa PAO1 New EC number: 2.3.2.2. Mapped from ExPASy proteomics server of the Swiss Institute of Bioinformatics (http://ca.expasy.org/enzyme/2.3.2.2) Geoffrey L. Winsor and Fiona S.L. Brinkman. Simon Fraser University, Canada.
Apr 29, 2002 PA0165 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Outer membrane protein. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Apr 29, 2002 PA0166 Pseudomonas aeruginosa PAO1 Subcellular localization information added based on significance similarity to protein of known localization. Localization: Inner membrane protein. Localization Rating: Class 2. Jennifer L. Gardy & Fiona Brinkman, Simon Fraser University, Canada
Jan 24, 2007 PA0169 Pseudomonas aeruginosa PAO1 New structure feature: PF00990: GGDEF domain characteristic of diguanylate cyclases . Deleting structue feature: PF00990: Domain of unknown function. New evidence reference (PubMedID): 16477007 Hemantha Kulasekara, Department of Microbiology and Molecular Genetics, Harvard Medical School, USA.
Aug 25, 2011 PA0169 Pseudomonas aeruginosa PAO1 New product name: SiaD. New gene name: siaD. New product name confidence: Class 1. New comment : Involved in surfactant-induced (SDS) aggregation.. New function class: Motility & Attachment. New PubMed reference: 17686022. New PubMed reference: 19638175. Janosch Klebensberger, Universitat Konstanz, Germany
Jan 20, 2017 PA0169 Pseudomonas aeruginosa PAO1 New PubMed ID: 26955366. New comment: Involved in postranscriptional regulation of CupA fimbriae via transcriptional activation of rsmZ. Janosch Klebensberger, University of Stuttgart, Institute of Technical Biochemistry, Stuttgart
Nov 9, 2004 PA0171 Pseudomonas aeruginosa PAO1 Annotation of gene described as hypothetical protein (Class 4). New function class: Motility & attachment. New comment: Involved in twitching motility. New evidence reference: 15289561. Raymond C. Lo and Fiona S.L. Brinkman, Simon Fraser University, Canada (based on literature review);
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