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PseudoCyc accounts provide several benefits. Through your PseudoCyc account you can:

Customize the appearance of PseudoCyc pages
Store organism sets for comparative operations
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Comparative Analysis and Statistics

This page allows you to compute statistics for a single Pathway/Genome Database, and to compute comparisons across multiple Pathway/Genome Databases for the set of organisms listed below. Note that computing summary statistics for the organism databases you have chosen may take several minutes. For faster operation, install Pathway Tools on your own computer! Click here for details.

Click here to go to the Webinar page, where you can watch the Comparative and Omics Tools in BioCyc instructional videos.

Note: In addition to reflecting differences in biology of different organisms, these statistics will reflect differences in the levels of curation, data availability, and completeness of the PGDBs for these organisms.

Select which set(s) of comparative-analysis tables you wish to generate:

Reactions: breakdowns by type of substrate, by EC Number, by number of isozymes, etc.
Pathways: breakdown by pathway class, information on pathway holes.
Compounds: small molecules that act as substrates, enzyme activators/inhibitors/cofactors.
Proteins: breakdown of protein complexes by type and number of subunits, number of enzymes, number of enzymes with activators/inhibitors/cofactors, multifunctional enzymes.
Orthologs: proteins shared among organisms or unique to an organism.
Transporters: proteins that facilitate the movement of compounds across cell membranes.
Transcription Units: number of genes per transcription unit, number of operons per pathway.

Select one or more organism databases:

Agrobacterium tumefaciens C58	Escherichia coli O157:H7 EDL933	Mycobacterium tuberculosis H37Rv
Bacillus anthracis Ames	Francisella tularensis subsp. tularensis SCHU S4	Pseudomonas aeruginosa PAO1
Caulobacter vibrioides Caulobacter crescentus CB15	Helicobacter pylori 26695	Shigella flexneri 2a str. 2457T
Escherichia coli CFT073	Homo sapiens	Vibrio cholerae O1 biovar eltor str. N16961
Escherichia coli K12	Mycobacterium tuberculosis CDC1551

Note: if you create a user account and log in, you can save your organism lists for next time.

Page generated by SRI International Pathway Tools version 12.5 on Sat Jul 31, 2010.
Pseudomonas aeruginosa PAO1 version 12.5.1.

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