Pseudomonas aeruginosa PAO1, PA0077 (icmF1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Protein secretion/export apparatus Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Hcp secretion island I (HSI-I) type VI secretion system ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR03348 JCVI: type VI secretion system membrane subunit TssM IPR017731 Type VI secretion system protein TssM1-like 8 1099 0.0
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 50 219 1.34E-11
Pfam PF06761 Intracellular multiplication and human macrophage-killing IPR009612 IcmF-related 429 722 2.5E-86
CDD cd00882 Ras_like_GTPase - - 55 198 0.0074833
PANTHER PTHR36153 INNER MEMBRANE PROTEIN-RELATED - - 3 1101 0.0
Pfam PF14331 IcmF-related N-terminal domain IPR025743 IcmF-related, N-terminal domain 120 377 4.1E-99
Coils Coil Coil - - 21 41 -
Pfam PF06744 Type VI secretion protein IcmF C2-like domain IPR010623 Type VI secretion system IcmF, C-terminal 976 1082 2.3E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.