Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0006783 | heme biosynthetic process | Inferred from Mutant Phenotype | ECO:0000016 loss-of-function mutant phenotype evidence |
8982003 | Reviewed by curator |
Biological Process | GO:0006783 | heme biosynthetic process | Inferred from Direct Assay | ECO:0000002 direct assay evidence |
||
Biological Process | GO:0051188 | obsolete cofactor biosynthetic process | Inferred from Direct Assay | ECO:0000002 direct assay evidence |
||
Biological Process | GO:0006091 | generation of precursor metabolites and energy | Inferred from Direct Assay | ECO:0000002 direct assay evidence |
||
Molecular Function | GO:0051536 | iron-sulfur cluster binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF04055
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003824 | catalytic activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF04055
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0051539 | 4 iron, 4 sulfur cluster binding |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04051
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Database | Xref | Pathway | Version | Evidence | PMID |
---|---|---|---|---|---|
PseudoCAP | Biosynthesis of heme d1 |
ECO:0000037
not_recorded |
|||
PseudoCAP | Denitrification |
ECO:0000037
not_recorded |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
CDD | cd01335 | Radical_SAM | - | - | 31 | 214 | 2.24965E-25 |
PIRSF | PIRSF037420 | PqqE | IPR017200 | Coenzyme PQQ synthesis protein E-like | 13 | 386 | 0.0 |
SFLD | SFLDF00393 | heme D1 biosynthesis (NirJ-like) | IPR023992 | Pre-heme d1 synthase NirJ | 1 | 383 | 0.0 |
Pfam | PF04055 | Radical SAM superfamily | IPR007197 | Radical SAM | 33 | 187 | 1.4E-25 |
SFLD | SFLDG01216 | thioether bond formation requiring one auxiliary iron-sulfur cluster | - | - | 1 | 383 | 0.0 |
NCBIfam | TIGR04051 | JCVI: heme d1 biosynthesis radical SAM protein NirJ | IPR023992 | Pre-heme d1 synthase NirJ | 26 | 378 | 0.0 |
SUPERFAMILY | SSF102114 | Radical SAM enzymes | - | - | 23 | 351 | 1.96E-68 |
Pfam | PF13353 | 4Fe-4S single cluster domain | - | - | 28 | 138 | 1.7E-8 |
FunFam | G3DSA:3.20.20.70:FF:000188 | Mycofactocin radical SAM maturase MftC | - | - | 22 | 331 | 1.6E-101 |
SMART | SM00729 | MiaB | IPR006638 | Elp3/MiaA/NifB-like, radical SAM core domain | 27 | 230 | 5.8E-4 |
PANTHER | PTHR11228 | RADICAL SAM DOMAIN PROTEIN | - | - | 25 | 370 | 8.8E-84 |
Gene3D | G3DSA:3.20.20.70 | Aldolase class I | IPR013785 | Aldolase-type TIM barrel | 22 | 247 | 3.2E-47 |