Pseudomonas putida F1, Pput_0001 (dnaA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06571
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01008
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003688 DNA replication origin binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01008
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006275 regulation of DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01008
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006270 DNA replication initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01008
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01008
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppf02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature IPR020591 Chromosomal replication control, initiator DnaA-like 463 482 4.7E-53
Pfam PF08299 Bacterial dnaA protein helix-turn-helix IPR013159 Chromosomal replication initiator, DnaA C-terminal 414 482 5.6E-32
SMART SM00760 IPR013159 Chromosomal replication initiator, DnaA C-terminal 413 482 5.7E-44
CDD cd06571 Bac_DnaA_C IPR013159 Chromosomal replication initiator, DnaA C-terminal 414 503 5.89259E-42
Pfam PF11638 DnaA N-terminal domain IPR024633 DnaA N-terminal domain 4 63 3.0E-21
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 171 381 9.77E-44
TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA IPR001957 Chromosomal replication control, initiator DnaA 6 503 0.0
PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature IPR020591 Chromosomal replication control, initiator DnaA-like 267 281 4.7E-53
Gene3D G3DSA:1.10.1750.10 IPR010921 Trp repressor/replication initiator 412 505 9.7E-38
Gene3D G3DSA:1.10.8.60 336 406 3.1E-23
SUPERFAMILY SSF48295 IPR010921 Trp repressor/replication initiator 401 503 8.11E-37
CDD cd00009 AAA 185 328 1.67832E-18
PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature IPR020591 Chromosomal replication control, initiator DnaA-like 235 249 4.7E-53
Pfam PF00308 Bacterial dnaA protein IPR013317 Chromosomal replication initiator protein DnaA 170 387 1.1E-100
SMART SM00382 IPR003593 AAA+ ATPase domain 202 407 8.0E-7
Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. IPR001957 Chromosomal replication control, initiator DnaA 3 504 34.102
ProSitePatterns PS01008 DnaA protein signature. IPR018312 Chromosomal replication control, initiator DnaA, conserved site 463 482 -
PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature IPR020591 Chromosomal replication control, initiator DnaA-like 301 328 4.7E-53
Gene3D G3DSA:3.40.50.300 169 335 2.3E-49
PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature IPR020591 Chromosomal replication control, initiator DnaA-like 203 223 4.7E-53
Gene3D G3DSA:3.30.300.180 IPR038454 DnaA, N-terminal domain superfamily 2 112 5.8E-30

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.