Pseudomonas aeruginosa UCBPP-PA14, PA14_00460 (trpI)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:2000284 positive regulation of cellular amino acid biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0037
 ECO:0000249
sequence similarity evidence used in automatic assertion		 1904858
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0037
 ECO:0000249
sequence similarity evidence used in automatic assertion		 1904858
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class
Amino acid biosynthesis and metabolism Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.10.10:FF:000038 Glycine cleavage system transcriptional activator - - 5 89 3.1E-28
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 4 87 2.72E-20
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 23 34 6.4E-6
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 8 66 3.2E-18
Gene3D G3DSA:3.40.190.10 - - - 165 264 1.6E-34
Gene3D G3DSA:3.40.190.10 - - - 99 289 1.6E-34
FunFam G3DSA:3.40.190.10:FF:000017 Glycine cleavage system transcriptional activator - - 165 264 4.1E-31
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 95 294 8.32E-26
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 96 293 2.6E-20
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 8 293 4.1E-61
CDD cd08482 PBP2_TrpI IPR037418 HTH-type transcriptional regulator TrpI, PBP2 95 289 1.02514E-102
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 34 44 6.4E-6
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 7 93 1.7E-20
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 44 55 6.4E-6

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.