Pseudomonas aeruginosa UCBPP-PA14, PA14_01640

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 15 103 1.8E-20
PANTHER PTHR30126 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 14 303 5.0E-51
FunFam G3DSA:1.10.10.10:FF:000511 LysR family transcriptional regulator - - 15 102 2.3E-47
CDD cd05466 PBP2_LTTR_substrate - - 106 302 2.23612E-10
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 17 76 3.4E-16
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 100 302 4.1E-26
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 16 101 3.44E-18
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 97 302 4.71E-24
Gene3D G3DSA:3.40.190.290 - - - 106 304 8.5E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.