Pseudomonas aeruginosa UCBPP-PA14, PA14_01940

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Protein secretion/export apparatus Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.287.470 101 166 1.3E-63
SUPERFAMILY SSF111369 57 285 3.4E-25
Coils Coil 146 173 -
ProSiteProfiles PS51257 Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 5.0
MobiDBLite mobidb-lite consensus disorder prediction 363 383 -
Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain 64 270 1.5E-16
TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit IPR006143 RND efflux pump, membrane fusion protein 44 362 4.9E-69
Gene3D G3DSA:2.40.30.170 55 289 1.3E-63
Gene3D G3DSA:2.40.420.20 290 360 1.3E-63
Gene3D G3DSA:2.40.50.100 67 213 1.3E-63

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.