Pseudomonas aeruginosa UCBPP-PA14, PA14_09770 (souR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.60 - - - 228 333 5.8E-27
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 284 330 2.51E-8
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 232 282 1.16E-8
PANTHER PTHR43130 ARAC-FAMILY TRANSCRIPTIONAL REGULATOR - - 26 271 1.2E-32
Gene3D G3DSA:3.40.50.880 - IPR029062 Class I glutamine amidotransferase-like 25 222 2.6E-43
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 248 331 3.8E-21
SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like IPR029062 Class I glutamine amidotransferase-like 29 214 1.34E-35
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 254 329 1.1E-21
Pfam PF01965 DJ-1/PfpI family IPR002818 DJ-1/PfpI 45 196 2.0E-17
CDD cd03136 GATase1_AraC_ArgR_like - - 30 215 5.47222E-66

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.