Pseudomonas aeruginosa LESB58, PALES_00031 (gyrB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005694 chromosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01898
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.670
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006265 DNA topological change
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.670
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.670
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.670
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other LESB58 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.10.20.690:FF:000002 DNA gyrase subunit B - - 595 684 1.1E-43
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 221 243 1.8E-83
Pfam PF18053 DNA gyrase B subunit insert domain IPR041423 DNA gyrase subunit B insert domain 566 732 2.3E-51
FunFam G3DSA:3.30.565.10:FF:000002 DNA gyrase subunit B - - 4 220 3.9E-96
Hamap MF_01898 DNA gyrase subunit B [gyrB]. IPR011557 DNA gyrase, subunit B 4 806 101.230545
Pfam PF00986 DNA gyrase B subunit, carboxyl terminus IPR002288 DNA gyrase B subunit, C-terminal 734 795 8.2E-31
PRINTS PR00418 DNA topoisomerase II family signature - - 422 436 9.7E-72
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 222 394 2.85E-57
PRINTS PR00418 DNA topoisomerase II family signature - - 72 85 9.7E-72
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 362 376 1.8E-83
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 4 221 1.1E-94
PRINTS PR00418 DNA topoisomerase II family signature - - 489 505 9.7E-72
Pfam PF01751 Toprim domain IPR006171 TOPRIM domain 421 533 1.4E-17
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 376 396 1.8E-83
FunFam G3DSA:3.40.50.670:FF:000004 DNA gyrase subunit B - - 706 805 1.4E-48
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 33 177 2.5E-30
NCBIfam TIGR01059 JCVI: DNA gyrase subunit B IPR011557 DNA gyrase, subunit B 7 806 0.0
FunFam G3DSA:3.40.50.670:FF:000005 DNA gyrase subunit B - - 393 593 6.3E-124
PANTHER PTHR45866 DNA GYRASE/TOPOISOMERASE SUBUNIT B - - 3 805 0.0
CDD cd16928 HATPase_GyrB-like - - 38 217 3.79656E-105
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 7 219 5.24E-75
FunFam G3DSA:3.30.230.10:FF:000005 DNA gyrase subunit B - - 221 394 4.0E-77
PRINTS PR00418 DNA topoisomerase II family signature - - 115 129 9.7E-72
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 775 791 1.8E-83
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 314 330 1.8E-83
SMART SM00433 topII5 IPR001241 DNA topoisomerase, type IIA 37 799 0.0
Gene3D G3DSA:3.40.50.670 - IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 705 806 1.5E-28
Gene3D G3DSA:3.30.230.10 - IPR014721 Small ribosomal subunit protein uS5 domain 2-type fold, subgroup 222 398 4.5E-66
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 244 262 1.8E-83
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 197 210 1.8E-83
SUPERFAMILY SSF56719 Type II DNA topoisomerase IPR013760 DNA topoisomerase, type IIA-like domain superfamily 396 796 2.59E-88
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 472 481 1.8E-83
CDD cd00822 TopoII_Trans_DNA_gyrase - - 221 379 3.86198E-75
Gene3D G3DSA:3.10.20.690 - - - 595 684 1.5E-26
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 34 176 2.3E-22
PRINTS PR00418 DNA topoisomerase II family signature - - 270 283 9.7E-72
PRINTS PR00418 DNA topoisomerase II family signature - - 527 539 9.7E-72
Gene3D G3DSA:3.40.50.670 - IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 399 591 2.1E-75
Pfam PF00204 DNA gyrase B IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 222 392 9.2E-57
PRINTS PR00418 DNA topoisomerase II family signature - - 738 754 9.7E-72
CDD cd03366 TOPRIM_TopoIIA_GyrB IPR034160 DNA gyrase subunit B, TOPRIM domain 420 534 1.34844E-79
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 7 17 1.8E-83
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 182 197 1.8E-83
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 759 771 1.8E-83
PRINTS PR00418 DNA topoisomerase II family signature - - 37 52 9.7E-72
PRINTS PR00418 DNA topoisomerase II family signature - - 507 524 9.7E-72

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.