Pseudomonas aeruginosa UCBPP-PA14, PA14_08790 (rpsL)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest
Locus Tag
PA14_08790
Name
rpsL
Replicon chromosome
Genomic location 754693 - 755064 (+ strand)
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq YP_788851.1
GI 116052303
Entrez 4381343
INSDC ABJ13539.1
NCBI Locus Tag PA14_08790
UniParc UPI0000134C69
UniProtKB Acc Q02T85
UniProtKB ID RS12_PSEAB
UniRef100 UniRef100_A6UZI3
UniRef50 UniRef50_P61941
UniRef90 UniRef90_A6W397

Product

Feature Type CDS
Coding Frame 1
Product Name
30S ribosomal protein S12
Synonyms
Evidence for Translation
Charge (pH 7) 20.61
Kyte-Doolittle Hydrophobicity Value -0.818
Molecular Weight (kDa) 13.8
Isoelectric Point (pI) 11.60

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7UNU RIBOSOME 04/11/22 Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.9 ELECTRON MICROSCOPY 100.0
6SPG RIBOSOME 09/01/19 Pseudomonas aeruginosa 70s ribosome from a clinical isolate Pseudomonas aeruginosa 3.34 ELECTRON MICROSCOPY 100.0
7UNV RIBOSOME 04/11/22 Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.7 ELECTRON MICROSCOPY 100.0
6SPC RIBOSOME 09/01/19 Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate Pseudomonas aeruginosa 2.95 ELECTRON MICROSCOPY 100.0
6SPE RIBOSOME 09/01/19 Pseudomonas aeruginosa 30s ribosome from a clinical isolate Pseudomonas aeruginosa 3.6 ELECTRON MICROSCOPY 100.0
7UNR RIBOSOME 04/11/22 Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.9 ELECTRON MICROSCOPY 100.0
7UNW RIBOSOME 04/11/22 Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.6 ELECTRON MICROSCOPY 100.0
6SPF RIBOSOME 09/01/19 Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate Pseudomonas aeruginosa 2.89 ELECTRON MICROSCOPY 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 660 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001443 (531 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA14_08790
Search term: rpsL

Human Homologs

Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value: 9.5e-21
Percent Identity: 49.5
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value: 9.5e-21
Percent Identity: 49.5
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value: 9.5e-21
Percent Identity: 49.5
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value: 9.5e-21
Percent Identity: 49.5
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value: 9.5e-21
Percent Identity: 49.5
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value: 9.5e-21
Percent Identity: 49.5

References

No references are associated with this feature.