Pseudomonas aeruginosa PAO1, PA3998

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA3998
Name
Synonym: ybeD
Replicon chromosome
Genomic location 4478627 - 4478908 (- strand)

Cross-References

RefSeq NP_252687.1
GI 15599193
Affymetrix PA3998_at
Entrez 878953
GenBank AAG07385.1
INSDC AAG07385.1
NCBI Locus Tag PA3998
protein_id(GenBank) gb|AAG07385.1|AE004817_9|gnl|PseudoCAP|PA3998
TIGR NTL03PA03998
UniParc UPI00000C4EC3
UniProtKB Acc Q9X6V8
UniProtKB ID Y3998_PSEAE
UniRef100 UniRef100_Q02SG5
UniRef50 UniRef50_Q02SG5
UniRef90 UniRef90_Q02SG5

Product

Feature Type CDS
Coding Frame 1
Product Name
conserved hypothetical protein
Product Name Confidence: Class 4
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Detected by iTRAQ (PMID:21863142).
Charge (pH 7) -5.32
Kyte-Doolittle Hydrophobicity Value -0.066
Molecular Weight (kDa) 10.3
Isoelectric Point (pI) 4.59

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 119 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001685 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3998

Human Homologs

References

Comparisons of Two Proteomic Analyses of Non-Mucoid and Mucoid Pseudomonas aeruginosa Clinical Isolates from a Cystic Fibrosis Patient.
Rao J, Damron FH, Basler M, Digiandomenico A, Sherman NE, Fox JW, Mekalanos JJ, Goldberg JB
Front Microbiol 2011;2:162
PubMed ID: 21863142