Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA0077
|
Name |
icmF1
Synonym: tssM1 |
Replicon | chromosome |
Genomic location | 91521 - 94826 (- strand) |
Transposon Mutants | 10 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 3 transposon mutants in orthologs |
Comment | Hcp Secretion Island-I-encoded type VI secretion system (H1-T6SS) |
RefSeq | NP_248767.1 |
GI | 15595275 |
Affymetrix | PA0077_at |
Entrez | 879396 |
GenBank | AAG03467.1 |
INSDC | AAG03467.1 |
NCBI Locus Tag | PA0077 |
protein_id(GenBank) | gb|AAG03467.1|AE004446_15|gnl|PseudoCAP|PA0077 |
TIGR | NTL03PA00078 |
UniParc | UPI00000C4F1E |
UniProtKB Acc | Q9I755 |
UniProtKB ID | Q9I755_PSEAE |
UniRef100 | UniRef100_Q9I755 |
UniRef50 | UniRef50_Q9I755 |
UniRef90 | UniRef90_Q9I755 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
IcmF1
|
Synonyms | |
Evidence for Translation |
Detected using LC-MS/MS (121.46 kDa, PMID:21751344)
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | -4.61 |
Kyte-Doolittle Hydrophobicity Value | -0.244 |
Molecular Weight (kDa) | 121.5 |
Isoelectric Point (pI) | 6.27 |
Individual Mappings | |
Additional evidence for subcellular localization |
Source 1 | |
Database | VFDB : VF0334 |
Category | Hcp secretion island-1 encoded type VI secretion system (H-T6SS) |
Evidence |
ECO:0000305
curator inference used in manual assertion
|
Host Organism | |
Notes | |
Reference | 16763151 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 104 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG000076 (865 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA0077
Search term: icmF1
Search term: IcmF1
|
A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus.
Mougous JD, Cuff ME, Raunser S, Shen A, Zhou M, Gifford CA, Goodman AL, Joachimiak G, Ordoñez CL, Lory S, Walz T, Joachimiak A, Mekalanos JJ
Science 2006 Jun 9;312(5779):1526-30
PubMed ID: 16763151
|
A type VI secretion system of Pseudomonas aeruginosa targets a toxin to bacteria.
Hood RD, Singh P, Hsu F, Güvener T, Carl MA, Trinidad RR, Silverman JM, Ohlson BB, Hicks KG, Plemel RL, Li M, Schwarz S, Wang WY, Merz AJ, Goodlett DR, Mougous JD
Cell Host Microbe 2010 Jan 21;7(1):25-37
PubMed ID: 20114026
|
In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages.
Shalom G, Shaw JG, Thomas MS
Microbiology (Reading) 2007 Aug;153(Pt 8):2689-2699
PubMed ID: 17660433
|
Proteomic analysis of outer membrane vesicles derived from Pseudomonas aeruginosa.
Choi DS, Kim DK, Choi SJ, Lee J, Choi JP, Rho S, Park SH, Kim YK, Hwang D, Gho YS
Proteomics 2011 Aug;11(16):3424-9
PubMed ID: 21751344
|
RsmA and AmrZ orchestrate the assembly of all three type VI secretion systems in Pseudomonas aeruginosa.
Allsopp LP, Wood TE, Howard SA, Maggiorelli F, Nolan LM, Wettstadt S, Filloux A
Proc Natl Acad Sci U S A 2017 Jul 18;114(29):7707-7712
PubMed ID: 28673999
|