Pseudomonas aeruginosa PAO1, PA1176 (napF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA1176
Name
napF
Replicon chromosome
Genomic location 1276117 - 1276608 (- strand)
Transposon Mutants 1 transposon mutants in PAO1

Cross-References

RefSeq NP_249867.1
GI 15596373
Affymetrix PA1176_napF_at
Entrez 878505
GenBank AAG04565.1
INSDC AAG04565.1
NCBI Locus Tag PA1176
protein_id(GenBank) gb|AAG04565.1|AE004547_11|gnl|PseudoCAP|PA1176
TIGR NTL03PA01177
UniParc UPI00000C528E
UniProtKB Acc Q9I4G1
UniProtKB ID Q9I4G1_PSEAE
UniRef100 UniRef100_Q9I4G1
UniRef50 UniRef50_Q9I4G1
UniRef90 UniRef90_Q9I4G1

Product

Feature Type CDS
Coding Frame 1
Product Name
ferredoxin protein NapF
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Charge (pH 7) 3.22
Kyte-Doolittle Hydrophobicity Value 0.080
Molecular Weight (kDa) 16.8
Isoelectric Point (pI) 7.86

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 108 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001134 (299 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA1176
Search term: napF

Human Homologs

References

Isolation of periplasmic nitrate reductase genes from Rhodobacter sphaeroides DSM 158: structural and functional differences among prokaryotic nitrate reductases.
Reyes F, Roldán MD, Klipp W, Castillo F, Moreno-Vivián C
Mol Microbiol 1996 Mar;19(6):1307-18
PubMed ID: 8730872
A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map.
Itoh T, Aiba H, Baba T, Hayashi K, Inada T, Isono K, Kasai H, Kimura S, Kitakawa M, Kitagawa M, Makino K, Miki T, Mizobuchi K, Mori H, Mori T, Motomura K, Nakade S, Nakamura Y, Nashimoto H, Nishio Y, Oshima T, Saito N, Sampei G, Seki Y, Horiuchi T
DNA Res 1996 Dec 31;3(6):379-92
PubMed ID: 9097040
Periplasmic nitrate-reducing system of the phototrophic bacterium Rhodobacter sphaeroides DSM 158: transcriptional and mutational analysis of the napKEFDABC gene cluster.
Reyes F, Gavira M, Castillo F, Moreno-Vivián C
Biochem J 1998 May 1;331 ( Pt 3)(Pt 3):897-904
PubMed ID: 9560320