Pseudomonas aeruginosa UCBPP-PA14, PA14_00900 (tagF1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest
Locus Tag
PA14_00900
Name
tagF1
Replicon chromosome
Genomic location 88489 - 89169 (- strand)
Transposon Mutants in orthologs 2 transposon mutants in orthologs
CommentHcp Secretion Island-I-encoded type VI secretion system (H1-T6SS)

Cross-References

RefSeq YP_788232.1
GI 116053796
Entrez 4380422
INSDC ABJ15032.1
NCBI Locus Tag PA14_00900
UniParc UPI000045D380
UniProtKB Acc Q02V04
UniProtKB ID Q02V04_PSEAB
UniRef100 UniRef100_Q02V04
UniRef50 UniRef50_Q4K3P5
UniRef90 UniRef90_Q9I756

Product

Feature Type CDS
Coding Frame 1
Product Name
TagF1
Product Name Confidence: Class 1
Synonyms hypothetical protein
Evidence for Translation
Charge (pH 7) -8.61
Kyte-Doolittle Hydrophobicity Value 0.149
Molecular Weight (kDa) 23.8
Isoelectric Point (pI) 4.40

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
2QNU STRUCTURAL GENOMICS, UNKNOWN FUNCTION 07/19/07 Crystal structure of PA0076 from Pseudomonas aeruginosa PAO1 at 2.05 A resolution Pseudomonas aeruginosa PAO1 2.05 X-RAY DIFFRACTION 99.6
6IZ8 SIGNALING PROTEIN 12/18/18 Crystal Structure of TagF from Pseudomonas aeruginosa Pseudomonas aeruginosa 2.7 X-RAY DIFFRACTION 99.1

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 49 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000075 (376 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA14_00900
Search term: tagF1
Search term: TagF1

Human Homologs

References

RsmA and AmrZ orchestrate the assembly of all three type VI secretion systems in Pseudomonas aeruginosa.
Allsopp LP, Wood TE, Howard SA, Maggiorelli F, Nolan LM, Wettstadt S, Filloux A
Proc Natl Acad Sci U S A 2017 Jul 18;114(29):7707-7712
PubMed ID: 28673999