Pseudomonas aeruginosa UCBPP-PA14, PA14_49870

Gene Feature Overview

Strain	Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006) GCF_000014625.1|latest
Locus Tag	PA14_49870
Name
Replicon	chromosome
Genomic location	4434110 - 4434649 (- strand)
Transposon Mutants	1 transposon mutants in UCBPP-PA14
Transposon Mutants in orthologs	3 transposon mutants in orthologs

Cross-References

RefSeq	YP_792145.1
GI	116049053
EC Number	3.5.1.88
Entrez	4380089
INSDC	ABJ10289.1
NCBI Locus Tag	PA14_49870
UniParc	UPI00003965F5
UniProtKB Acc	Q02IU1
UniProtKB ID	Q02IU1_PSEAB
UniRef100	UniRef100_Q02IU1
UniRef50	UniRef50_Q8PGV2
UniRef90	UniRef90_A6V966

Product

Feature Type	CDS
Coding Frame	1
Product Name	peptide deformylase
Synonyms
Evidence for Translation
Charge (pH 7)	-10.62
Kyte-Doolittle Hydrophobicity Value	-0.263
Molecular Weight (kDa)	20.1
Isoelectric Point (pI)	4.61

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
6JFN	HYDROLASE	02/11/19	K4U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa	Pseudomonas aeruginosa	2.04	X-RAY DIFFRACTION	100.0
6JFD	HYDROLASE	02/08/19	K1U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa	Pseudomonas aeruginosa	2.4	X-RAY DIFFRACTION	100.0
6JFF	HYDROLASE	02/08/19	K3U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa	Pseudomonas aeruginosa	2.1	X-RAY DIFFRACTION	100.0
6JFA	HYDROLASE	02/08/19	Met-Ala-Ser bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa	Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT	1.93	X-RAY DIFFRACTION	100.0
6JF9	HYDROLASE	02/08/19	Apo crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa	Pseudomonas aeruginosa	1.7	X-RAY DIFFRACTION	100.0
6JFC	HYDROLASE	02/08/19	Actinonin bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa	Pseudomonas aeruginosa	2.04	X-RAY DIFFRACTION	100.0
6JFE	HYDROLASE	02/08/19	K2U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa	Pseudomonas aeruginosa	2.1	X-RAY DIFFRACTION	100.0

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 586 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001082 (483 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PA14_49870 Search term: peptide deformylase

Human Homologs

References