Pseudomonas mendocina ymp, Pmen_0004 (gyrB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas mendocina ymp
GCF_000016565.1|latest
Locus Tag
Pmen_0004
Name
gyrB
Replicon chromosome
Genomic location 3820 - 6240 (+ strand)

Cross-References

RefSeq YP_001185511.1
GI 146305046
EC Number 5.99.1.3
Entrez 5106679
INSDC ABP82779.1
NCBI Locus Tag Pmen_0004
UniParc UPI0000E786DC
UniProtKB Acc A4XN63
UniProtKB ID A4XN63_PSEMY
UniRef100 UniRef100_A4XN63
UniRef50 UniRef50_P13364
UniRef90 UniRef90_C1DFU5

Product

Feature Type CDS
Coding Frame 1
Product Name
DNA gyrase subunit B
Synonyms
Evidence for Translation
Charge (pH 7) -16.00
Kyte-Doolittle Hydrophobicity Value -0.411
Molecular Weight (kDa) 90.0
Isoelectric Point (pI) 5.67

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 633 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000004 (553 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Pmen_0004
Search term: gyrB

Human Homologs

Ensembl 97, assembly GRCh38.p12
DNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]
E-value: 2.3e-31
Percent Identity: 25.7

References

No references are associated with this feature.