Pseudomonas aeruginosa PAO1, PA3161 (himD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
GCF_000006765.1|latest
Locus Tag
PA3161
Name
himD
Replicon chromosome
Genomic location 3547689 - 3547973 (- strand)
Transposon Mutants 1 transposon mutants in PAO1

Cross-References

RefSeq NP_251851.1
GI 15598357
Affymetrix PA3161_himD_at
DNASU PaCD00007391
Entrez 882561
GenBank AAG06549.1
INSDC AAG06549.1
NCBI Locus Tag PA3161
protein_id(GenBank) gb|AAG06549.1|AE004740_2|gnl|PseudoCAP|PA3161
TIGR NTL03PA03161
UniParc UPI0000001566
UniProtKB Acc Q51473
UniProtKB ID IHFB_PSEAE
UniRef100 UniRef100_A6V2R4
UniRef50 UniRef50_P23303
UniRef90 UniRef90_Q885T0

Product

Feature Type CDS
Coding Frame 1
Product Name
integration host factor beta subunit
Product Name Confidence: Class 1
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 3.71
Kyte-Doolittle Hydrophobicity Value -0.646
Molecular Weight (kDa) 10.6
Isoelectric Point (pI) 10.21

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold Protein Structure Database

Available for P. aeruginosa PAO1.

View predicted 3D structure in AlphaFold DB

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 555 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002454 (548 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3161
Search term: himD

Human Homologs

References

Pseudomonas aeruginosa contains an IHF-like protein that binds to the algD promoter.
Toussaint B, Delic-Attree I, Vignais PM
Biochem. Biophys. Res. Commun. 1993 Oct;196(1):416-421
PubMed ID: 8216322
Cloning and sequence analyses of the genes coding for the integration host factor (IHF) and HU proteins of Pseudomonas aeruginosa.
Delic-Attree I, Toussaint B, Vignais PM
Gene 1995 Feb;154(1):61-4
PubMed ID: 7867950