Pseudomonas aeruginosa PAO1, PA3161 (himD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa PAO1 (Reference)
GCF_000006765.1|latest |
| Locus Tag |
PA3161
|
| Name |
himD
|
| Replicon | chromosome |
| Genomic location | 3547689 - 3547973 (- strand) |
| Transposon Mutants | 1 transposon mutants in PAO1 |
Cross-References
| RefSeq | NP_251851.1 |
| GI | 15598357 |
| Affymetrix | PA3161_himD_at |
| DNASU | PaCD00007391 |
| Entrez | 882561 |
| GenBank | AAG06549.1 |
| INSDC | AAG06549.1 |
| NCBI Locus Tag | PA3161 |
| protein_id(GenBank) | gb|AAG06549.1|AE004740_2|gnl|PseudoCAP|PA3161 |
| TIGR | NTL03PA03161 |
| UniParc | UPI0000001566 |
| UniProtKB Acc | Q51473 |
| UniProtKB ID | IHFB_PSEAE |
| UniRef100 | UniRef100_A6V2R4 |
| UniRef50 | UniRef50_P23303 |
| UniRef90 | UniRef90_Q885T0 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
integration host factor beta subunit
|
| Synonyms | |
| Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
| Charge (pH 7) | 3.71 |
| Kyte-Doolittle Hydrophobicity Value | -0.646 |
| Molecular Weight (kDa) | 10.6 |
| Isoelectric Point (pI) | 10.21 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold Protein Structure Database
Available for P. aeruginosa PAO1.
| View predicted 3D structure in AlphaFold DB |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 555 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG002454 (548 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PA3161
Search term: himD
Search term: integration host factor beta subunit
|
Human Homologs
References
|
Pseudomonas aeruginosa contains an IHF-like protein that binds to the algD promoter.
Toussaint B, Delic-Attree I, Vignais PM
Biochem. Biophys. Res. Commun. 1993 Oct;196(1):416-421
PubMed ID: 8216322
|
|
Cloning and sequence analyses of the genes coding for the integration host factor (IHF) and HU proteins of Pseudomonas aeruginosa.
Delic-Attree I, Toussaint B, Vignais PM
Gene 1995 Feb;154(1):61-4
PubMed ID: 7867950
|