Motif View

Internal ID 17655599
Source Database TransTermHP TERM 3
Feature Type terminator
Name
Rho-independent transcription terminator TERM 3
Sequence CCCCGGCCTGGCGCCGGGG
Look for more occurrences
Start 6724
End 6742
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGACCCTCATGGAAA(5' tail) CCCCGGC(5' stem) CTGGC(loop) GCCGGGG(3' stem) TTTTCTTTTTGCGCC(3' tail). Confidence: 100. opp_overlap 6724, overlap 6719

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685