Motif View

Internal ID 17655616
Source Database TransTermHP TERM 26
Feature Type terminator
Name
Rho-independent transcription terminator TERM 26
Sequence GCCCGGCCAATGGCCGGGC
Look for more occurrences
Start 145903
End 145921
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACCTTGCCTGAAGAA(5' tail) GCCCGGCC(5' stem) ATT(loop) GGCCGGGC(3' stem) TTTTCTTTGGAGGGC(3' tail). Confidence: 100. opp_overlap 145903, overlap 145861 145860

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685