Pseudomonas aeruginosa UCBPP-PA14

Strain Overview
Organism Name Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
Species Pseudomonas aeruginosa
Strain UCBPP-PA14
Description/Title Sample from Pseudomonas aeruginosa UCBPP-PA14
Annotated Genes 5977
Partial Genes
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease burn
Geographic Location
Isolation Source burn wound
Sample Provider
Name
E-mail
Institution Massachusetts General Hospital
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 253
acsA
4		 aroE
4		 trpE
3		 nuoD
1		 ppsA
6		 guaA
16		 mutL
12
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000014625.1
Assembly Status latest
Scaffolds 1
Contigs
Contig N50 6537648
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02603591
NCBI Taxonomy ID 208963
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.

Annotated Features

Feature Count
gene 5984
CDS 5894
tRNA 59
rRNA 13
ncRNA 5

Subcellular Localization

Localization Count
Cytoplasmic 2659
Cytoplasmic Membrane 1335
Periplasmic 180
Outer Membrane 176
Extracellular 74
Unknown 1324
Unknown (This protein may have multiple localization sites) 146
Flagellar 17
Fimbrial 10
T3SS 4

Replicons

Name Length GC
Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome. 6537648 bp 66.3%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs