Pseudomonas aeruginosa CF39S

Strain Overview
Organism Name Pseudomonas aeruginosa CF39S
Species Pseudomonas aeruginosa
Strain CF39S
Description/Title
Annotated Genes 6793
Partial Genes 43
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease Cystic Fibrosis
Geographic Location
Location Name USA: Seattle, Washington
Isolation Source lung
Latitude/Longitude 47.608013 N 122.335167 W
Sample Provider
Name Jane Burns
E-mail
Institution
Date Collected Mar-1993/Apr-1996

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 175
ppsA
14
trpE
19
nuoD
3
mutL
3
guaA
5
acsA
28
aroE
22
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN13226654
NCBI Taxonomy ID
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas aeruginosa strain CF39S chromosome, complete genome
Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence

Annotated Features

Feature Count
gene 6793
CDS 6714
pseudo 77
tRNA 63
rRNA 12
ncRNA 3
tmRNA 1

Replicons

Name Length GC
Pseudomonas aeruginosa strain CF39S chromosome, complete genome 6797918 bp 66.2%
Replicon details
Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence 468631 bp 56.6%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF