GEO Dataset

GEO Dataset Dataset details
GDS ID 200028606
GDS Accession GSE28606
Title Monitoring of functional gene responses to ERD (enhanced reductive dechlorination) from four TCE-contaminated sites
Summary A functional microarray targeting 24 genes involved in chlorinated solvent biodegradation pathways has been developed and used to monitor the gene diversity present in four trichloroethylene (TCE) contaminated sites under ERD (enhanced reductive dechlorination) treatment. The microarray format provided by NimbleGen and used in this study is 12x135K. 2 µg of labelled gDNA from 30 groundwater samples were hybridized on the microarrays.
Expression Profiles 0
Number of Samples 30
GEO Series GSE28606
Reference PMID:22432919
GDS Data Type Genome variation profiling by array
Taxon Desulfitobacterium; Nitrosomonas; Thauera; Dehalobacter; Sulfurospirillum; Shewanella; Pseudomonas; Mycobacterium; Geobacter; groundwater metagenome; Methylosinus; Dehalococcoides

Platforms

NameNimbleGen_Custom_Chloroethene_array_V02
Technology Typein situ oligonucleotide
AccessionGPL13409

GEO Samples

GEO Accession Condition
GSM707939 gDNA from contaminated site B, campaign 3, well P4 (SBC3P4)
GSM707929 gDNA from contaminated site B, campaign 1, well P1 (SBC1P1)
GSM707934 gDNA from contaminated site B, campaign 2, well P3 (SBC2P3)
GSM707948 gDNA from contaminated site F, well P1 (SFP1)
GSM707930 gDNA from contaminated site B, campaign 1, well P2 (SBC1P2)
GSM707955 gDNA from contaminated site H, well P1 (SHP1)
GSM707949 gDNA from contaminated site F, well P2 (SFP2)
GSM707935 gDNA from contaminated site B, campaign 2, well P4 (SBC2P4)
GSM707947 gDNA from contaminated site B, campaign 5, well P4 (SBC5P4)
GSM707931 gDNA from contaminated site B, campaign 1, well P4 (SBC1P4)
GSM707940 gDNA from contaminated site B, campaign 4, well P1 (SBC4P1)
GSM707957 gDNA from contaminated site H, well P3 (SHP3)
GSM707937 gDNA from contaminated site B, campaign 3, well P2 (SBC3P2)
GSM707936 gDNA from contaminated site B, campaign 3, well P1 (SBC3P1)
GSM707958 gDNA from contaminated site H, well P4 (SHP4)
GSM707942 gDNA from contaminated site B, campaign 4, well P3 (SBC4P3)
GSM707933 gDNA from contaminated site B, campaign 2, well P2 (SBC2P2)
GSM707954 gDNA from contaminated site G, well P4 (SGP4)
GSM707938 gDNA from contaminated site B, campaign 3, well P3 (SBC3P3)
GSM707950 gDNA from contaminated site F, well P3 (SFP3)
GSM707945 gDNA from contaminated site B, campaign 5, well P2 (SBC5P2)
GSM707953 gDNA from contaminated site G, well P3 (SGP3)
GSM707952 gDNA from contaminated site G, well P1 (SGP1)
GSM707956 gDNA from contaminated site H, well P2 (SHP2)
GSM707943 gDNA from contaminated site B, campaign 4, well P4 (SBC4P4)
GSM707932 gDNA from contaminated site B, campaign 2, well P1 (SBC2P1)
GSM707951 gDNA from contaminated site F, well P4 (SFP4)
GSM707941 gDNA from contaminated site B, campaign 4, well P2 (SBC4P2)
GSM707946 gDNA from contaminated site B, campaign 5, well P3 (SBC5P3)
GSM707944 gDNA from contaminated site B, campaign 5, well P1 (SBC5P1)