GEO Dataset
| GEO Dataset | Dataset details |
| GDS ID | 200028608 |
| GDS Accession | GSE28608 |
| Title | Monitoring of functional gene responses to biostimulation from a TCE-contaminated site |
| Summary | A functional microarray targeting 24 genes involved in chlorinated solvent biodegradation pathways has been developed and used to monitor the gene expression in a contaminated site (site B) under ERD (enhanced reductive dechlorination) treatment. The microarray format provided by NimbleGen and used in this study is 12x135K. 4 µg of labelled antisense mRNA from 3 groundwater samples were hybridized on the microarray. |
| Expression Profiles | 0 |
| Number of Samples | 3 |
| GEO Series | GSE28608 |
| Reference | PMID:22432919 |
| GDS Data Type | Expression profiling by array |
| Taxon | Methylosinus; Dehalobacter; Sulfurospirillum; Shewanella; Mycobacterium; Thauera; Desulfitobacterium; groundwater metagenome; Pseudomonas; Nitrosomonas; Dehalococcoides; Geobacter |
Platforms
| Name | NimbleGen_Custom_Chloroethene_array_V02 |
| Technology Type | in situ oligonucleotide |
| Accession | GPL13409 |
GEO Samples
| GEO Accession | Condition |
|---|---|
| GSM707969 | antisense mRNA from contaminated site B, campaign 5, well P1 (SBC5P1) |
| GSM707970 | antisense mRNA from contaminated site B, campaign 5, well P2 (SBC5P2) |
| GSM707971 | antisense mRNA from contaminated site B, campaign 5, well P3 (SBC5P3) |