GEO Dataset

GEO Dataset Dataset details
GDS ID 200026931
GDS Accession GSE26931
Title Mixed Culture Gene Expression of E. coli and Pseudomonas aeruginosa
Summary Transcriptional profiles of Escherichia coli MG1655 in mixed culture with Pseudomonas aeruginosa PAO1 showed a number of E. coli genes to be upregulated including purA-F and other genes associated with purine synthesis. In contrast, genes associated with pyrimidine synthesis were unaffected. Competition experiments in both planktonic and biofilm cultures, using three purine synthesis mutants, purD, purH, and purT showed little difference in E. coli survival from the parent strain. As purines are components of the cell signals, cAMP and c-di-GMP, we conducted competition experiments with E. coli mutants lacking adenylate cyclase (cyaA), cAMP phosphodiesterase (cpdA), and the catabolite receptor protein (crp), as well as ydeH, an uncharacterized gene that has been associated with c-di-GMP synthesis. Survival of the cyaA and crp mutants during co-culture were significantly less than the parent strain. Supplementation of the media with 1mM cAMP could restore survival of the cyaA mutant but not the crp mutant. In contrast, survival of the cpdA mutant was similar to the parent strain. Survival of the ydeH mutant was moderately less than the parent, suggesting that cAMP has more impact on E. coli mixed culture growth than c-di-GMP. Addition of 1 mM indole restored the survival of both the cyaA and crp mutations. Mutants in genes for tryptophan synthesis (trpE) and indole production (tnaA) showed a loss of competition and recovery through indole supplementation, comparable to the cyaA and crp mutants. Overall, these results suggest indole and cAMP as major contributing factors to E. coli growth in mixed culture.
Expression Profiles 0
Number of Samples 8
GEO Series GSE26931
Reference PMID:22101045
GDS Data Type Expression profiling by array
Taxon Escherichia coli; Pseudomonas aeruginosa; Pseudomonas aeruginosa PAO1

Platforms

Name[Pae_G1a] Affymetrix Pseudomonas aeruginosa Array
Technology Typein situ oligonucleotide
AccessionGPL84
Name[E_coli_2] Affymetrix E. coli Genome 2.0 Array
Technology Typein situ oligonucleotide
AccessionGPL3154

GEO Samples

GEO Accession Condition
GSM663162 P. aeruginosa and E. coli ZK126 culture rep2
GSM663159 E. coli ZK126 pure culture rep1
GSM663160 E. coli ZK126 pure culture rep2
GSM663157 E. coli ZK126 and P. aeruginosa culture rep1
GSM663161 P. aeruginosa and E. coli ZK126 culture rep1
GSM663163 P. aeruginosa pure culture rep1
GSM663158 E. coli ZK126 and P. aeruginosa culture rep2
GSM663164 P. aeruginosa pure culture rep2