GEO Dataset
| GEO Dataset | Dataset details |
| GDS ID | 200011051 |
| GDS Accession | GSE11051 |
| Title | Transcription of ectopic DNA in E.coli |
| Summary | To assess the degree of transcription in E.coli of ectopic DNA from related gamma proteobacteria, we designed a custom NimbleGen array containing highly redundant and substantially complete oligonucleotide probe sets for E. coli, H. influenzae and P. aeruginosa annotated genes. We transformed E. coli, in separate experiments, with individual BAC clones and probed arrays with cDNA derived from DNase treated RNA isolated from the overnight culture of the transformants. Keywords: cross-regulation on genomic scale |
| Expression Profiles | 0 |
| Number of Samples | 10 |
| GEO Series | GSE11051 |
| Reference | PMID:18701636 |
| GDS Data Type | Expression profiling by genome tiling array |
| Taxon | Escherichia coli; Haemophilus influenzae; Homo sapiens; Pseudomonas aeruginosa |
Platforms
| Name | BC Cancer Agency_E.coli_H.influenzae_P.aeruginosa_HumanChr6_340K array v1 |
| Technology Type | spotted oligonucleotide |
| Accession | GPL6680 |
GEO Samples
| GEO Accession | Condition |
|---|---|
| GSM279160 | E.coli-DH10B_P.aeruginosa-cloneE4-transformed_v1 |
| GSM279164 | E.coli-DH10B_Human-BAC clone P8 transformed_v1 |
| GSM279154 | E.coli-DH10B_H.influenzae-cloneS-transformed_v1 |
| GSM279139 | Hinfluenzae RNA - native state - v1.0 |
| GSM279149 | E.coli-DH10B_H.influenzae-cloneQtransformed_v1 |
| GSM279144 | Pseudomonas aeruginosa native cells - RNA extract |
| GSM279163 | E.coli-DH10B_H.influenzae-Pooled BAC clones from tiling path-transformed individually_v1 |
| GSM279137 | E.coli-DH10B_nativeState_v1 |
| GSM279162 | E.coli-DH10B_P.aeruginosa-cloneE6-transformed_v1 |
| GSM279161 | E.coli-DH10B_P.aeruginosa-cloneE5-transformed_v1 |