Pseudomonas abietaniphila ATCC 700689

Strain Overview
Organism Name Pseudomonas abietaniphila ATCC 700689
Species Pseudomonas abietaniphila
Strain ATCC 700689
Description/Title Pseudomonas abietaniphila LMG 20220
Annotated Genes 6535
Partial Genes 107
Host Information
Host Species Taxonomic Name not applicable
Geographic Location
Location Name missing
Isolation Source missing
Latitude/Longitude missing
Environmental Feature (?) missing
Environmental Material (?) missing
Sample Provider
Name
E-mail
Institution DOE Joint Genome Institute
Date Collected not collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_900100795.1
Assembly Status latest
Scaffolds
Contigs 54
Contig N50 357714
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN05216605
NCBI Taxonomy ID 89065
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6535
CDS 6468
pseudo 128
tRNA 58
rRNA 5
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2758
Cytoplasmic Membrane 1510
Periplasmic 224
Outer Membrane 108
Extracellular 60
Unknown 1665
Unknown (This protein may have multiple localization sites) 143
Flagellar 22
Fimbrial 4
T3SS 2

Replicons

54 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF