The Pseudomonas Genome Database collaborates with an international panel of expert Pseudomonas researchers to provide high quality updates to the PAO1 genome annotation and make cutting edge genome analysis data available
|Manually-curated annotation updates||3029|
|Curated GO terms||4178|
View Complete and Draft Genomes
You can now view annotations and sequences for both complete and draft genomes.
|View a list of complete and draft Pseudomonas genomes in this database:|
|Pseudomonas genome, transcriptome and epigenomic projects at NCBI:|
|Updates to gene annotations in this database:|
We welcome all suggested updates to Pseudomonas annotations and no registration is required!
PseudoCAP was the first wholly Internet-based and community-based genome annotation project for analysis of a genome of a free-living organism.
Funding for this work is gratefully provided by Cystic Fibrosis Foundation Therapeutics Inc., a non-profit drug discovery and development affiliate of the Cystic Fibrosis Foundation.
February 5, 2016
Updated broken links to Pseudomonas Ortholog Database currently in beta status.
January 13, 2016
Restored an option on the advanced search page to allow retrieval of proteins with no known 3D structure (for a specific isolate). This feature was available in the previous version of our database but had been inadvertently omitted from the new site.
Due to damage caused by a storm, this website and the SFU emergency power supply were down between 07:00 and 18:00 PST on Tuesday, December 8 while repairs were conducted.
Service restored after power outage on SFU campus. Power to much of SFU campus was disrupted at 21:00 PDT on Sunday, December 6 and negatively impacted campus IT services and the Pseudomonas Genome Database website for over 12 hours. Thanks for your patience during this time.October 27, 2015
New batch download options added.
October 26, 2015
Removed 11 genomes with assemblies marked as 'suppressed' by NCBI. Many of these suppressed assemblies had flags indicating problems with assembly (More).
Reloaded RefSeq genomes with updated assemblies to fix problem with some sequence files being missing.
September 28, 2015
129 updates including new genes, product names, and subcellular localizations.
38 manually annotated GO terms
New isolates. Added 619 complete and draft Pseudomonas genomes downloaded from NCBI RefSeq.
Updated virulence factor annotations to provide more contextual information
Curated isolate metadata for isolation source, host organism, host disease status and geographical information.
Downloads page updated. Provided links to GTF files containing intergenic regions and genes. The format of the sequence headers in the corresponding fasta files have been slightly adjusted to match the sequence identifiers in the GTF files.
Fixed bug that was causing pseudogenes to not be shown in linear gene plots.