The Pseudomonas Genome Database collaborates with an international panel of expert Pseudomonas researchers to provide high quality updates to the PAO1 genome annotation and make cutting edge genome analysis data available
|Manually-curated annotation updates||3542|
|Curated GO terms||4421|
March 18, 2019
Pseudomonas Genome Database version 18.1 released.
After some delays related to moving to a new data center, 1500 new Pseudomonas genomes have been added for a total of 4847 (number based on RefSeq genomes available in September, 2018). An additional release incorporating all current RefSeq Pseudomonas genomes will soon follow.
102 curated updates to annotations.
Updated InterPro motif predictions and computationally-predicted GO term annotations (based on InterProScan v5.30-69.0).
Updated RCSB PDB 3D structures, AMR gene predictions (CARD 3.0.1 using RGI 4.2.2 that uses bit score cutoff instead of e-value), drug targets (DrugBank 5.1.1) and human homologs (based on Ensembl 94) .
Strains and Isolates in the Database
We welcome all suggested updates to Pseudomonas annotations and no registration is required!
PseudoCAP was the first wholly Internet-based and community-based genome annotation project for analysis of a genome of a free-living organism.
Funding for this work is gratefully provided by Cystic Fibrosis Foundation Therapeutics Inc., a non-profit drug discovery and development affiliate of the Cystic Fibrosis Foundation.