Pseudomonas aeruginosa UCBPP-PA14, PA14_30620

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest
Locus Tag
PA14_30620
Name
Replicon chromosome
Genomic location 2652368 - 2653396 (- strand)
Transposon Mutants 1 transposon mutants in UCBPP-PA14
Transposon Mutants in orthologs 2 transposon mutants in orthologs

Cross-References

RefSeq YP_790606.1
GI 116050575
Entrez 4380619
INSDC ABJ11811.1
NCBI Locus Tag PA14_30620
UniParc UPI0000395E3F
UniProtKB Acc Q02N80
UniProtKB ID Q02N80_PSEAB
UniRef100 UniRef100_S0I178
UniRef50 UniRef50_V6AE53
UniRef90 UniRef90_V6AE53

Product

Feature Type CDS
Coding Frame 1
Product Name
AraC family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 1.91
Kyte-Doolittle Hydrophobicity Value -0.437
Molecular Weight (kDa) 39.2
Isoelectric Point (pI) 8.16

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
5CHH TRANSCRIPTION 07/10/15 Crystal structure of transcriptional regulator CdpR from Pseudomonas aeruginosa Pseudomonas aeruginosa 1.85 X-RAY DIFFRACTION 98.8

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 189 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002959 (302 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA14_30620

Human Homologs

References

No references are associated with this feature.