Pseudomonas protegens Pf-5, PFL_3123 (fapF)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_3123
Name	fapF
Replicon	chromosome
Genomic location	3592881 - 3594176 (+ strand)

Cross-References

RefSeq	YP_260229.1
GI	70730488
Entrez	3477294
INSDC	AAY92393.1
NCBI Locus Tag	PFL_3123
UniParc	UPI000054D73A
UniProtKB Acc	Q4KC04
UniProtKB ID	Q4KC04_PSEF5
UniRef100	UniRef100_Q4KC04
UniRef50	UniRef50_I4XVM8
UniRef90	UniRef90_Q4KC04

Product

Feature Type	CDS
Coding Frame	1
Product Name	FapF Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Charge (pH 7)	-8.78
Kyte-Doolittle Hydrophobicity Value	-0.207
Molecular Weight (kDa)	46.3
Isoelectric Point (pI)	4.68

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 37 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003481 (782 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_3123 Search term: fapF Search term: FapF

Human Homologs

References

Functional amyloid in Pseudomonas. Dueholm MS, Petersen SV, Sønderkær M, Larsen P, Christiansen G, Hein KL, Enghild JJ, Nielsen JL, Nielsen KL, Nielsen PH, Otzen DE Mol Microbiol 2010 Aug;77(4):1009-20 PubMed ID: 20572935