Motif View

Internal ID 17655820
Source Database TransTermHP TERM 350
Feature Type terminator
Name
Rho-independent transcription terminator TERM 350
Sequence CCGGCGCCCACTGCCTGGGCGCCGG
Look for more occurrences
Start 1435385
End 1435409
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCAGGCCATGGAAG(5' tail) CCGGCGCCCA(5' stem) CTGCC(loop) TGGGCGCCGG(3' stem) TTCTTCCCGGCGATT(3' tail). Confidence: 100. opp_overlap 1435384, overlap 1435373

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685