Motif View

Internal ID 17655856
Source Database TransTermHP TERM 403
Feature Type terminator
Name
Rho-independent transcription terminator TERM 403
Sequence CGAAGGCCACCGCCTCACAGCGGTGGCCTTCG
Look for more occurrences
Start 1732261
End 1732292
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTCTGAGTTCCAGGA(5' tail) CGAAGGCCACCGC(5' stem) CTCACA(loop) GCGGTGGCCTTCG(3' stem) TCGTTCTATCGCATC(3' tail). Confidence: 100. opp_overlap 1732265, overlap 1732259 1732258

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685