Motif View

Internal ID 17655985
Source Database TransTermHP TERM 599
Feature Type terminator
Name
Rho-independent transcription terminator TERM 599
Sequence GCCCCGCGATTGCAGCTCCTGGTCGCGGGGC
Look for more occurrences
Start 2814651
End 2814681
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAATCGGCCACTCCA(5' tail) GCCCCGCGATTGCAG(5' stem) CTC(loop) CTG-G-TCGCGGGGC(3' stem) TTTTTTATGCGCAGC(3' tail). Confidence: 100. gap 2

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685