Motif View

Internal ID 17656058
Source Database TransTermHP TERM 720
Feature Type terminator
Name
Rho-independent transcription terminator TERM 720
Sequence GAAAAGCCGCACAGCCTGTAAGGGCGTGCGGCTTTTC
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Start 3324886
End 3324922
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGGTAAGGCGCTAAA(5' tail) GAAAAGCCGCAC-GCCC(5' stem) TTAC(loop) AGGCTGTGCGGCTTTTC(3' stem) CACGTCGGAAAATCC(3' tail). Confidence: 100. gap 1, opp_overlap 3324891, overlap 3324891

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685