Motif View

Internal ID 17656405
Source Database TransTermHP TERM 1256
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1256
Sequence GGGGTTAGCGCAAGCTAACCCC
Look for more occurrences
Start 5242114
End 5242135
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CACCATATTTTTCAA(5' tail) GGGGTTAGC(5' stem) GCAA(loop) GCTAACCCC(3' stem) TTTTTGTTTTGGTCG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685