Motif View

Internal ID 17656575
Source Database TransTermHP TERM 1521
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1521
Sequence ATTTTCCACGGGTCGCTCCGCTGGAGCGGCCTGTGGAAAAG
Look for more occurrences
Start 6213536
End 6213576
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGGGACGACTGAAA(5' tail) CTTTTCCACAGGCCGCTCC(5' stem) AGC(loop) GGAGCGACCCGTGGAAAAT(3' stem) CCACTCAGCGGCCAG(3' tail). Confidence: 100. overlap 6213537

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685