Motif View

Internal ID 17657409
Source Database TransTermHP TERM 1303
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1303
Sequence GCCCCGGCGCTTGGCCGGGGC
Look for more occurrences
Start 5513812
End 5513832
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCCCGTCCCAGGAAA(5' tail) GCCCCGGC(5' stem) CAAGC(loop) GCCGGGGC(3' stem) TTTTCGTTCCTGCCC(3' tail). Confidence: 90. opp_overlap 5513806 5513812

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685