Motif View

Internal ID 17662338
Source Database TransTermHP TERM 8
Feature Type terminator
Name
Rho-independent transcription terminator TERM 8
Sequence GGCCCGGCGTCGCGAGGACGCCGGGCC
Look for more occurrences
Start 8644
End 8670
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PA7 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCTGTAACGAAAAAA(5' tail) GGCCCGGCGTC(5' stem) GCGAG(loop) GACGCCGGGCC(3' stem) TTTCTTCGAGGCGAA(3' tail). Confidence: 100. opp_overlap 8644

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685