Pseudomonas aeruginosa PAO1

Strain Overview
Organism Name Pseudomonas aeruginosa PAO1 (Reference)
Species Pseudomonas aeruginosa
Strain PAO1
Subspecific Genetic Lineage
Description/Title Sample from Pseudomonas aeruginosa PAO1
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Annotated Genes 5688
References
Partial Genes
Cross-References
NCBI BioSample Accession SAMN02603714
NCBI Biosample ID 2603714
NCBI Taxonomy ID 208964
GOLD Accession
NCBI Bioprojects
NCBI Sequencing Assay
NCBI Assembly
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 5698
CDS 5584
tRNA 63
ncRNA 37
rRNA 12
pseudo 6
tmRNA 1

Subcellular Localization

Localization Count
No localization assigned and computational localization prediction using PSORTB not performed 7
Cytoplasmic 2623
Cytoplasmic Membrane 1308
Periplasmic 209
Outer Membrane 194
Extracellular 109
Unknown 1162
Unknown (This protein may have multiple localization sites) 142
Flagellar 18
Fimbrial 6
Host Associated 10
T3SS 4
Outer Membrane Vesicle 338

Breakdown by COG Category

Feature Count
General function prediction only 709
Amino acid transport and metabolism 558
Function unknown 548
Transcription 526
Signal transduction mechanisms 455
Energy production and conversion 366
Inorganic ion transport and metabolism 352
Cell wall/membrane/envelope biogenesis 282
Lipid transport and metabolism 270
Carbohydrate transport and metabolism 261
Coenzyme transport and metabolism 218
Translation, ribosomal structure and biogenesis 207
Secondary metabolites biosynthesis, transport and catabolism 206
Posttranslational modification, protein turnover, chaperones 201
Intracellular trafficking, secretion, and vesicular transport 182
Cell motility 160
Replication, recombination and repair 160
Nucleotide transport and metabolism 107
Defense mechanisms 74
Cell cycle control, cell division, chromosome partitioning 39
Chromatin structure and dynamics 3
RNA processing and modification 2
Sample Provider
Name
E-mail
Institution
Date Collected
Geographic Location
Location Name Australia: Melbourne
Isolation Source wound
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606

Replicons

Name Length GC
Pseudomonas aeruginosa PAO1 chromosome, complete genome. 6264404 bp 66.6%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

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TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs

Download Intergenic Region Annotations

File also contains gene annotations

GTF