Strain Overview | |
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Organism Name | Pseudomonas umsongensis UNC430CL58Col |
Species | Pseudomonas umsongensis |
Strain | UNC430CL58Col |
Description/Title | Sample from Pseudomonas umsongensis UNC430CL58Col |
Annotated Genes | 5835 |
Partial Genes | 78 |
Host Information |
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Geographic Location |
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Sample Provider | |
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Name | |
Institution | DOE Joint Genome Institute |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | 28 |
Contigs | 31 |
Contig N50 | 426747 |
Assembly Level | Scaffold |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02952999 |
NCBI Taxonomy ID | 1380369 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 5817 |
CDS | 5748 |
tRNA | 57 |
pseudo | 18 |
rRNA | 11 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2513 |
Cytoplasmic Membrane | 1304 |
Periplasmic | 189 |
Outer Membrane | 119 |
Extracellular | 43 |
Unknown | 1255 |
Unknown (This protein may have multiple localization sites) | 122 |
Flagellar | 17 |
Fimbrial | 3 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |