Pseudomonas aeruginosa PA103

Strain Overview
Organism Name Pseudomonas aeruginosa PA103 - Assembly GCF_000611975.2
Species Pseudomonas aeruginosa
Strain PA103
Description/Title Sample from Pseudomonas aeruginosa PA103
Annotated Genes 6400
Partial Genes 441
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Isolation Source sputum
Sample Provider
Name
E-mail
Institution Northwestern University Feinberg School of Medicine, Department of Medicine
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 298
guaA
13		 aroE
4		 nuoD
1		 mutL
3		 acsA
18		 ppsA
17		 trpE
13
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000611975.2
Assembly Status latest
Scaffolds 262
Contigs 269
Contig N50 53587
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02951864
NCBI Taxonomy ID 1081927
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6364
CDS 6290
tRNA 64
pseudo 26
rRNA 9
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2786
Cytoplasmic Membrane 1412
Periplasmic 179
Outer Membrane 172
Extracellular 72
Unknown 1512
Unknown (This protein may have multiple localization sites) 157
Flagellar 17
Fimbrial 9
T3SS 4

Replicons

262 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF