Pseudomonas aeruginosa 3579

Strain Overview
Organism Name Pseudomonas aeruginosa 3579
Species Pseudomonas aeruginosa
Strain 3579
Description/Title Sample from Pseudomonas aeruginosa 3579
Annotated Genes 6343
Partial Genes 152
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected Unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 500
trpE
1		 nuoD
4		 ppsA
15		 mutL
3		 aroE
57		 guaA
7		 acsA
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000629205.1
Assembly Status latest
Scaffolds 97
Contigs 107
Contig N50 203260
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02584692
NCBI Taxonomy ID 1447534
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6322
CDS 6249
tRNA 62
pseudo 21
rRNA 10
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2782
Cytoplasmic Membrane 1374
Periplasmic 167
Outer Membrane 164
Extracellular 76
Unknown 1541
Unknown (This protein may have multiple localization sites) 145
Flagellar 15
Fimbrial 7
T3SS 4

Replicons

97 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF